File List

Here is a list of all files with brief descriptions:

basecode/Cinfo.cpp
basecode/Cinfo.h [code]
basecode/consts.cpp
basecode/Conv.h [code]
basecode/DataElement.cpp
basecode/DataElement.h [code]
basecode/DestFinfo.cpp
basecode/DestFinfo.h [code]
basecode/Dinfo.h [code]
basecode/doubleEq.cpp
basecode/doubleEq.h [code]
basecode/Element.cpp
basecode/Element.h [code]
basecode/ElementValueFinfo.h [code]
basecode/EpFunc.cpp
basecode/EpFunc.h [code]
basecode/Eref.cpp
basecode/Eref.h [code]
basecode/FieldElement.cpp
basecode/FieldElement.h [code]
basecode/FieldElementFinfo.cpp
basecode/FieldElementFinfo.h [code]
basecode/Finfo.cpp
basecode/Finfo.h [code]
basecode/FuncOrder.h [code]
basecode/global.cpp
basecode/global.h [code]
basecode/GlobalDataElement.cpp
basecode/GlobalDataElement.h [code]
basecode/header.h [code]
basecode/HopFunc.cpp
basecode/HopFunc.h [code]
basecode/Id.cpp
basecode/Id.h [code]
basecode/LocalDataElement.cpp
basecode/LocalDataElement.h [code]
basecode/LookupElementValueFinfo.h [code]
basecode/LookupValueFinfo.h [code]
basecode/main.cpp
basecode/MsgDigest.h [code]
basecode/MsgElement.h [code]
basecode/MsgFuncBinding.h [code]
basecode/ObjId.cpp
basecode/ObjId.h [code]
basecode/OpFunc.h [code]
basecode/OpFuncBase.cpp
basecode/OpFuncBase.h [code]
basecode/PrepackedBuffer.cpp
basecode/PrepackedBuffer.h [code]
basecode/ProcInfo.h [code]
basecode/ProcOpFunc.h [code]
basecode/SetGet.cpp
basecode/SetGet.h [code]
basecode/SharedFinfo.cpp
basecode/SharedFinfo.h [code]
basecode/SparseMatrix.cpp
basecode/SparseMatrix.h [code]
basecode/SrcFinfo.cpp
basecode/SrcFinfo.h [code]
basecode/testAsync.cpp
basecode/ValueFinfo.cpp
basecode/ValueFinfo.h [code]
biophysics/CaConc.cpp
biophysics/CaConc.h [code]
biophysics/CaConcBase.cpp
biophysics/CaConcBase.h [code]
biophysics/ChanBase.cpp
biophysics/ChanBase.h [code]
biophysics/ChanCommon.cpp
biophysics/ChanCommon.h [code]
biophysics/Compartment.cpp
biophysics/Compartment.h [code]
biophysics/CompartmentBase.cpp
biophysics/CompartmentBase.h [code]
biophysics/CompartmentDataHolder.cpp
biophysics/CompartmentDataHolder.h [code]
biophysics/DifShell.cpp
biophysics/DifShell.h [code]
biophysics/GapJunction.cpp
biophysics/GapJunction.h [code]
biophysics/HHChannel.cpp
biophysics/HHChannel.h [code]
biophysics/HHChannel2D.cpp
biophysics/HHChannel2D.h [code]
biophysics/HHChannelBase.cpp
biophysics/HHChannelBase.h [code]
biophysics/HHGate.cpp
biophysics/HHGate.h [code]
biophysics/HHGate2D.cpp
biophysics/HHGate2D.h [code]
biophysics/IntFire.cpp
biophysics/IntFire.h [code]
biophysics/IzhikevichNrn.cpp
biophysics/IzhikevichNrn.h [code]
biophysics/Leakage.cpp
biophysics/Leakage.h [code]
biophysics/MarkovChannel.cpp
biophysics/MarkovChannel.h [code]
biophysics/MarkovGslSolver.cpp
biophysics/MarkovGslSolver.h [code]
biophysics/MarkovRateTable.cpp
biophysics/MarkovRateTable.h [code]
biophysics/MarkovSolver.cpp
biophysics/MarkovSolver.h [code]
biophysics/MarkovSolverBase.cpp
biophysics/MarkovSolverBase.h [code]
biophysics/MatrixOps.cpp
biophysics/MatrixOps.h [code]
biophysics/MgBlock.cpp
biophysics/MgBlock.h [code]
biophysics/Nernst.cpp
biophysics/Nernst.h [code]
biophysics/Neuron.cpp
biophysics/Neuron.h [code]
biophysics/NMDAChan.cpp
biophysics/NMDAChan.h [code]
biophysics/RandSpike.cpp
biophysics/RandSpike.h [code]
biophysics/ReadCell.cpp
biophysics/ReadCell.h [code]
biophysics/ReadSwc.cpp
biophysics/ReadSwc.h [code]
biophysics/SpikeGen.cpp
biophysics/SpikeGen.h [code]
biophysics/SpikeRingBuffer.cpp
biophysics/SpikeRingBuffer.h [code]
biophysics/Spine.cpp
biophysics/Spine.h [code]
biophysics/SwcSegment.cpp
biophysics/SwcSegment.h [code]
biophysics/SymCompartment.cpp
biophysics/SymCompartment.h [code]
biophysics/SynChan.cpp
biophysics/SynChan.h [code]
biophysics/testBiophysics.cpp
biophysics/VClamp.cpp
biophysics/VClamp.h [code]
biophysics/VectorTable.cpp
biophysics/VectorTable.h [code]
builtins/Arith.cpp
builtins/Arith.h [code]
builtins/Func.cpp
builtins/Func.h [code]
builtins/Function.cpp
builtins/Function.h [code]
builtins/Group.cpp
builtins/Group.h [code]
builtins/HDF5DataWriter.cpp
builtins/HDF5DataWriter.h [code]
builtins/HDF5WriterBase.cpp
builtins/HDF5WriterBase.h [code]
builtins/InputVariable.cpp
builtins/InputVariable.h [code]
builtins/Interpol.cpp
builtins/Interpol.h [code]
builtins/Interpol2D.cpp
builtins/Interpol2D.h [code]
builtins/Mstring.cpp
builtins/Mstring.h [code]
builtins/NSDFWriter.cpp
builtins/NSDFWriter.h [code]
builtins/SpikeStats.cpp
builtins/SpikeStats.h [code]
builtins/Stats.cpp
builtins/Stats.h [code]
builtins/StimulusTable.cpp
builtins/StimulusTable.h [code]
builtins/Table.cpp
builtins/Table.h [code]
builtins/TableBase.cpp
builtins/TableBase.h [code]
builtins/testBuiltins.cpp
builtins/TimeTable.cpp
builtins/TimeTable.h [code]
builtins/Variable.cpp
builtins/Variable.h [code]
device/DiffAmp.cpp
device/DiffAmp.h [code]
device/PIDController.cpp
device/PIDController.h [code]
device/PulseGen.cpp
device/PulseGen.h [code]
device/RC.cpp
device/RC.h [code]
Docs/developer/doxygen-API.cpp
Docs/developer/doxygen-design-document.cpp
Docs/developer/doxygen-main.cpp
Docs/developer/doxygen-programmers-guide.cpp
Docs/developer/hsolve-developer-overview.cpp
Docs/developer/hsolve-implementation.cpp
Docs/developer/parameter_fitting.cpp
Docs/developer/profiling.cpp
Docs/developer/the-messaging-system.cpp
hsolve/Cell.cpp
hsolve/Cell.h [code]
hsolve/HinesMatrix.cpp
hsolve/HinesMatrix.h [code]
hsolve/HSolve.cpp
hsolve/HSolve.h [code]
hsolve/HSolveActive.cpp
hsolve/HSolveActive.h [code]
hsolve/HSolveActiveSetup.cpp
hsolve/HSolveInterface.cpp
hsolve/HSolvePassive.cpp
hsolve/HSolvePassive.h [code]
hsolve/HSolveStruct.cpp
hsolve/HSolveStruct.h [code]
hsolve/HSolveUtils.cpp
hsolve/HSolveUtils.h [code]
hsolve/RateLookup.cpp
hsolve/RateLookup.h [code]
hsolve/testHSolve.cpp
hsolve/TestHSolve.h [code]
hsolve/ZombieCaConc.cpp
hsolve/ZombieCaConc.h [code]
hsolve/ZombieCompartment.cpp
hsolve/ZombieCompartment.h [code]
hsolve/ZombieHHChannel.cpp
hsolve/ZombieHHChannel.h [code]
kinetics/BufPool.cpp
kinetics/BufPool.h [code]
kinetics/CplxEnzBase.cpp
kinetics/CplxEnzBase.h [code]
kinetics/Enz.cpp
kinetics/Enz.h [code]
kinetics/EnzBase.cpp
kinetics/EnzBase.h [code]
kinetics/lookupVolumeFromMesh.cpp
kinetics/lookupVolumeFromMesh.h [code]
kinetics/MMenz.cpp
kinetics/MMenz.h [code]
kinetics/Pool.cpp
kinetics/Pool.h [code]
kinetics/PoolBase.cpp
kinetics/PoolBase.h [code]
kinetics/Reac.cpp
kinetics/Reac.h [code]
kinetics/ReacBase.cpp
kinetics/ReacBase.h [code]
kinetics/ReadCspace.cpp
kinetics/ReadCspace.h [code]
kinetics/ReadKkit.cpp
kinetics/ReadKkit.h [code]
kinetics/Species.cpp
kinetics/Species.h [code]
kinetics/testKinetics.cpp
kinetics/WriteKkit.cpp
ksolve/FuncRateTerm.h [code]
ksolve/FuncTerm.cpp
ksolve/FuncTerm.h [code]
ksolve/Gsolve.cpp
ksolve/Gsolve.h [code]
ksolve/GssaSystem.h [code]
ksolve/GssaVoxelPools.cpp
ksolve/GssaVoxelPools.h [code]
ksolve/KinSparseMatrix.cpp
ksolve/KinSparseMatrix.h [code]
ksolve/Ksolve.cpp
ksolve/Ksolve.h [code]
ksolve/OdeSystem.h [code]
ksolve/RateTerm.cpp
ksolve/RateTerm.h [code]
ksolve/SteadyState.cpp
ksolve/SteadyState.h [code]
ksolve/Stoich.cpp
ksolve/Stoich.h [code]
ksolve/testKsolve.cpp
ksolve/VoxelPools.cpp
ksolve/VoxelPools.h [code]
ksolve/VoxelPoolsBase.cpp
ksolve/VoxelPoolsBase.h [code]
ksolve/XferInfo.h [code]
ksolve/ZombieBufPool.cpp
ksolve/ZombieBufPool.h [code]
ksolve/ZombieEnz.cpp
ksolve/ZombieEnz.h [code]
ksolve/ZombieFunction.cpp
ksolve/ZombieFunction.h [code]
ksolve/ZombieMMenz.cpp
ksolve/ZombieMMenz.h [code]
ksolve/ZombiePool.cpp
ksolve/ZombiePool.h [code]
ksolve/ZombiePoolInterface.cpp
ksolve/ZombiePoolInterface.h [code]
ksolve/ZombieReac.cpp
ksolve/ZombieReac.h [code]
mesh/Boundary.cpp
mesh/Boundary.h [code]
mesh/ChemCompt.cpp
mesh/ChemCompt.h [code]
mesh/CubeMesh.cpp
mesh/CubeMesh.h [code]
mesh/CylBase.cpp
mesh/CylBase.h [code]
mesh/CylMesh.cpp
mesh/CylMesh.h [code]
mesh/MeshCompt.cpp
mesh/MeshCompt.h [code]
mesh/MeshEntry.cpp
mesh/MeshEntry.h [code]
mesh/NeuroMesh.cpp
mesh/NeuroMesh.h [code]
mesh/NeuroNode.cpp
mesh/NeuroNode.h [code]
mesh/PsdMesh.cpp
mesh/PsdMesh.h [code]
mesh/SpineEntry.cpp
mesh/SpineEntry.h [code]
mesh/SpineMesh.cpp
mesh/SpineMesh.h [code]
mesh/Stencil.cpp
mesh/Stencil.h [code]
mesh/testMesh.cpp
mesh/VoxelJunction.h [code]
msg/DiagonalMsg.cpp
msg/DiagonalMsg.h [code]
msg/Msg.cpp
msg/Msg.h [code]
msg/OneToAllMsg.cpp
msg/OneToAllMsg.h [code]
msg/OneToOneDataIndexMsg.cpp
msg/OneToOneDataIndexMsg.h [code]
msg/OneToOneMsg.cpp
msg/OneToOneMsg.h [code]
msg/SingleMsg.cpp
msg/SingleMsg.h [code]
msg/SparseMsg.cpp
msg/SparseMsg.h [code]
msg/testMsg.cpp
randnum/Binomial.cpp
randnum/Binomial.h [code]
randnum/BinomialRng.cpp
randnum/BinomialRng.h [code]
randnum/Exponential.cpp
randnum/Exponential.h [code]
randnum/ExponentialRng.cpp
randnum/ExponentialRng.h [code]
randnum/Gamma.cpp
randnum/Gamma.h [code]
randnum/GammaRng.cpp
randnum/GammaRng.h [code]
randnum/mt19937ar.cpp
randnum/Normal.cpp
randnum/Normal.h [code]
randnum/NormalRng.cpp
randnum/NormalRng.h [code]
randnum/Poisson.cpp
randnum/Poisson.h [code]
randnum/PoissonRng.cpp
randnum/PoissonRng.h [code]
randnum/Probability.cpp
randnum/Probability.h [code]
randnum/RandGenerator.cpp
randnum/RandGenerator.h [code]
randnum/randnum.h [code]
randnum/Uniform.cpp
randnum/Uniform.h [code]
randnum/UniformRng.cpp
randnum/UniformRng.h [code]
sbml/SbmlReader.cpp
sbml/SbmlReader.h [code]
sbml/SbmlWriter.cpp
sbml/SbmlWriter.h [code]
scheduling/Clock.cpp
scheduling/Clock.h [code]
scheduling/testScheduling.cpp
scheduling/testScheduling.h [code]
shell/LoadModels.cpp
shell/LoadModels.h [code]
shell/Neutral.cpp
shell/Neutral.h [code]
shell/SaveModels.cpp
shell/Shell.cpp
shell/Shell.h [code]
shell/ShellCopy.cpp
shell/ShellThreads.cpp
shell/testShell.cpp
shell/Wildcard.cpp
shell/Wildcard.h [code]
signeur/Adaptor.cpp
signeur/Adaptor.h [code]
signeur/testSigNeur.cpp
utility/Annotator.cpp
utility/Annotator.h [code]
utility/numutil.cpp
utility/numutil.h [code]
utility/setupenv.cpp
utility/strutil.cpp
utility/strutil.h [code]
utility/types.cpp
utility/utility.h [code]
utility/Vec.cpp
utility/Vec.h [code]