biophysics/ReadSwc.h

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/**********************************************************************
** This program is part of 'MOOSE', the
** Messaging Object Oriented Simulation Environment.
**           Copyright (C) 2003-2015 Upinder S. Bhalla. and NCBS
** It is made available under the terms of the
** GNU Lesser General Public License version 2.1
** See the file COPYING.LIB for the full notice.
**********************************************************************/
#ifndef READSWC_H
#define READSWC_H

class ReadSwc
{
    public:
        ReadSwc( const string& fname );
        bool validate() const;
        void assignKids();
        void cleanZeroLength();
        void parseBranches();
        void traverseBranch( const SwcSegment& s, double &len, double& L,
                       vector< int >& cable ) const;
        bool build( Id parent, 
                    double lambda, double RM, double RA, double CM );
        void diagnostics() const;

    private:
        vector< SwcSegment > segs_;

        vector< SwcBranch > branches_; 
};

#endif // READSWC_H

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