ksolve/KinSparseMatrix.h

Go to the documentation of this file.

/**********************************************************************
** This program is part of 'MOOSE', the
** Messaging Object Oriented Simulation Environment.
**           Copyright (C) 2003-2010 Upinder S. Bhalla. and NCBS
** It is made available under the terms of the
** GNU Lesser General Public License version 2.1
** See the file COPYING.LIB for the full notice.
**********************************************************************/

#ifndef _KIN_SPARSE_MATRIX_H
#define _KIN_SPARSE_MATRIX_H

class KinSparseMatrix: public SparseMatrix< int >
{
    public: 
//      KinSparseMatrix();
//      KinSparseMatrix( unsigned int nrows, unsigned int ncolumns );

        double computeRowRate(
            unsigned int row, const vector< double >& v
        ) const;


        void getGillespieDependence( 
            unsigned int row, vector< unsigned int >& cols
        ) const;

        void fireReac( unsigned int reacIndex, vector< double >& S ) const;
    
        void truncateRow( unsigned int maxColumnIndex );

        vector< int > matrixEntry() const;
        vector< unsigned int > colIndex() const;
        vector< unsigned int > rowStart() const;
    private:
        vector< unsigned int > rowTruncated_;
};

#endif  // _KIN_SPARSE_MATRIX_H

---