kinetics/testKinetics.cpp File Reference

#include "header.h"
#include "../shell/Shell.h"
#include "ReadKkit.h"
#include "ReadCspace.h"
#include "EnzBase.h"
#include "MMenz.h"
#include "ReacBase.h"
#include "Reac.h"

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Functions
void	testReadKkit ()
bool	isClose (double x, double y, double tol)
void	testPoolVolumeScaling ()
void	testReacVolumeScaling ()
void	testTwoReacGetNeighbors ()
void	testReadCspace ()
void	testMMenz ()
double	estT (double s)
void	testMMenzProcess ()
void	testWriteKkit (Id id)
void	testVolSort ()
void	testKinetics ()
void	testMpiKinetics ()
void	testKineticsProcess ()

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Function Documentation

double estT

(

double

s

)

References c.

Referenced by testMMenzProcess().

bool isClose	(	double	x,
		double	y,
		double	tol
	)

void testKinetics

(

)

References testMMenz(), testPoolVolumeScaling(), testReacVolumeScaling(), testReadCspace(), testTwoReacGetNeighbors(), and testVolSort().

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void testKineticsProcess

(

)

References testMMenzProcess().

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void testMMenz

(

)

References Shell::doCreate(), Shell::doDelete(), doubleEq(), Id::eref(), MMenz::vEnz(), MMenz::vGetKcat(), MMenz::vGetKm(), MMenz::vProcess(), MMenz::vReinit(), MMenz::vSetKcat(), MMenz::vSetKm(), and MMenz::vSub().

Referenced by testKinetics().

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void testMMenzProcess

(

)

References Shell::doAddMsg(), Shell::doCreate(), Shell::doDelete(), Shell::doReinit(), Shell::doSetClock(), Shell::doStart(), doubleApprox(), Shell::doUseClock(), estT(), and Field< A >::set().

Referenced by testKineticsProcess().

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void testMpiKinetics

(

)

void testPoolVolumeScaling

(

)

References Shell::doAddMsg(), Shell::doCreate(), Shell::doDelete(), doubleEq(), Field< A >::get(), NA, PI, Field< A >::set(), and Id::value().

Referenced by testKinetics().

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void testReacVolumeScaling

(

)

References Shell::doAddMsg(), Shell::doCreate(), Shell::doDelete(), doubleEq(), Field< A >::get(), NA, Field< A >::set(), and Id::value().

Referenced by testKinetics().

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void testReadCspace

(

)

References ReadCspace::testReadModel().

Referenced by testKinetics().

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void testReadKkit

(

)

References Shell::doDelete(), ReadKkit::dumpPlots(), ReadKkit::read(), and ReadKkit::run().

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void testTwoReacGetNeighbors

(

)

References Shell::doAddMsg(), Shell::doCreate(), Shell::doDelete(), Id::element(), Element::getNeighbors(), Reac::initCinfo(), and Id::value().

Referenced by testKinetics().

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void testVolSort

(

)

References findVolOrder().

Referenced by testKinetics().

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void testWriteKkit

(

Id

id

)

References writeKkit().

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