MOOSE: biophysics/DifShell.h Source File

00001 /**********************************************************************
00002 ** This program is part of 'MOOSE', the
00003 ** Multiscale Object Oriented Simulation Environment.
00004 **           copyright (C) 2003-2008
00005 **           Upinder S. Bhalla, Niraj Dudani and NCBS
00006 ** It is made available under the terms of the
00007 ** GNU Lesser General Public License version 2.1
00008 ** See the file COPYING.LIB for the full notice.
00009 **********************************************************************/
00010 
00011 #ifndef _DifShell_h
00012 #define _DifShell_h
00013 
00014 class DifShell
00015 {
00016     public:
00017         DifShell();
00018         
00020         // Field access functions
00022         double getC( ) const;
00023 
00024         void setCeq(double Ceq );
00025         double getCeq() const;
00026 
00027         void setD( double D );
00028         double getD() const;
00029 
00030         void setValence( double valence );
00031         double getValence() const;
00032 
00033         void setLeak( double leak );
00034         double getLeak() const;
00035 
00036         void setShapeMode( unsigned int shapeMode );
00037         unsigned int getShapeMode() const;
00038 
00039         void setLength( double length );
00040         double getLength() const;
00041 
00042         void setDiameter( double diameter );
00043         double getDiameter() const;
00044 
00045         void setThickness( double thickness );
00046         double getThickness() const;
00047 
00048         void setVolume( double volume );
00049         double getVolume() const;
00050 
00051         void setOuterArea( double outerArea );
00052         double getOuterArea() const;
00053 
00054         void setInnerArea( double innerArea );
00055         double getInnerArea() const;
00056 
00058         // Dest functions
00060         void reinit_0( const Eref & e, ProcPtr p );
00061 
00062         void process_0(const Eref & e, ProcPtr p );
00063 
00064                 void process_1(const Eref & e, ProcPtr p );
00065 
00066                 void reinit_1(const Eref & e, ProcPtr p ); // dummyFunc
00067                 
00068         void buffer(
00069          double kf,
00070          double kb,
00071          double bFree,
00072          double bBound );
00073 
00074         void fluxFromOut(
00075          double outerC,
00076          double outerThickness );
00077 
00078         void fluxFromIn(
00079          double innerC,
00080          double innerThickness );
00081 
00082         void influx(
00083          double I );
00084 
00085         void outflux(
00086          double I );
00087 
00088         void fInflux(
00089          double I,
00090          double fraction );
00091 
00092         void fOutflux(
00093          double I,
00094          double fraction );
00095 
00096         void storeInflux(
00097          double flux );
00098 
00099         void storeOutflux(
00100          double flux );
00101 
00102         void tauPump(
00103          double kP,
00104          double Ceq );
00105 
00106         void eqTauPump(
00107          double kP );
00108 
00109         void mmPump(
00110          double vMax,
00111          double Kd );
00112 
00113         void hillPump(
00114                     double vMax,
00115                     double Kd,
00116                     unsigned int hill );
00117 
00118                 static const Cinfo * initCinfo();
00119                 
00120     private:
00121         void localReinit_0(  const Eref & e, ProcPtr p );
00122         void localProcess_0( const Eref & e, ProcPtr p );
00123         void localProcess_1( const Eref & e, ProcPtr p );
00124         void localBuffer( double kf, double kb, double bFree, double bBound );
00125         void localFluxFromOut( double outerC, double outerThickness );
00126         void localFluxFromIn( double innerC, double innerThickness );
00127         void localInflux(   double I );
00128         void localOutflux( double I );
00129         void localFInflux( double I, double fraction );
00130         void localFOutflux( double I, double fraction );
00131         void localStoreInflux( double flux );
00132         void localStoreOutflux( double flux );
00133         void localTauPump( double kP, double Ceq );
00134         void localEqTauPump( double kP );
00135         void localMMPump( double vMax, double Kd );
00136         void localHillPump( double vMax, double Kd, unsigned int hill );
00137 
00138         double dCbyDt_;
00139         double C_;
00140         double Ceq_;
00141         double D_;
00142         double valence_;
00143         double leak_;
00144         unsigned int shapeMode_;
00145         double length_;
00146         double diameter_;
00147         double thickness_;
00148         double volume_;
00149         double outerArea_;
00150         double innerArea_;
00151         
00153         static const double F_;
00154 };
00155 
00156 #endif // _DifShell_h