MOOSE: kinetics/EnzBase.h Source File

00001 /**********************************************************************
00002 ** This program is part of 'MOOSE', the
00003 ** Messaging Object Oriented Simulation Environment.
00004 **           Copyright (C) 2003-2010 Upinder S. Bhalla. and NCBS
00005 ** It is made available under the terms of the
00006 ** GNU Lesser General Public License version 2.1
00007 ** See the file COPYING.LIB for the full notice.
00008 **********************************************************************/
00009 
00010 #ifndef _ENZ_BASE_H
00011 #define _ENZ_BASE_H
00012 
00018 class EnzBase
00019 {
00020     public: 
00021         EnzBase();
00022         virtual ~EnzBase();
00023 
00025         // Field assignment stuff
00027         void setKm( const Eref& e, double v );
00028         double getKm( const Eref& e ) const;
00029         void setNumKm( const Eref& e, double v );
00030         double getNumKm( const Eref& e ) const;
00031         void setKcat( const Eref& e, double v );
00032         double getKcat( const Eref& e ) const;
00033 
00034         // This doesn't need a virtual form, depends on standard msgs.
00035         unsigned int getNumSub( const Eref& e ) const;
00036 
00038         // Virtual funcs for field assignment stuff
00040         virtual void vSetKm( const Eref& e, double v ) = 0;
00041         virtual double vGetKm( const Eref& e ) const = 0;
00042         virtual void vSetNumKm( const Eref& e, double v ) = 0;
00043         virtual double vGetNumKm( const Eref& e ) const = 0;
00044         virtual void vSetKcat( const Eref& e, double v ) = 0;
00045         virtual double vGetKcat( const Eref& e ) const = 0;
00046 
00048         // Dest funcs
00050         void process( const Eref& e, ProcPtr p );
00051         void reinit( const Eref& e, ProcPtr p );
00052         void sub( double n );
00053         void enz( double n );
00054         void prd( double n );
00055         void remesh( const Eref& e );
00057         // Virtual dest funcs
00059         virtual void vProcess( const Eref& e, ProcPtr p );
00060         virtual void vReinit( const Eref& e, ProcPtr p );
00061         virtual void vSub( double n );
00062         virtual void vEnz( double n );
00063         virtual void vRemesh( const Eref& e );
00064 
00066         // Zombification functions.
00068         static void zombify( Element* original, const Cinfo* zClass, 
00069                         Id solver );
00071         virtual void setSolver( Id solver, Id orig );
00072 
00074 
00075         static const Cinfo* initCinfo();
00076     private:
00077 };
00078 
00079 #endif // ENZ_BASE_H