ksolve/testKsolve.cpp File Reference

#include "header.h"
#include "../shell/Shell.h"
#include "RateTerm.h"
#include "muParser.h"
#include "FuncTerm.h"
#include "SparseMatrix.h"
#include "KinSparseMatrix.h"
#include "VoxelPoolsBase.h"
#include "../mesh/VoxelJunction.h"
#include "XferInfo.h"
#include "ZombiePoolInterface.h"
#include "Stoich.h"

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Functions
Id	makeReacTest ()
void	testSetupReac ()
void	testBuildStoich ()
void	testRunKsolve ()
void	testRunGsolve ()
void	testFuncTerm ()
void	testKsolve ()
void	testKsolveProcess ()

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Function Documentation

Id makeReacTest

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Tab controlled by table A + Tab <===> B A + B -sumtot--> tot1 2B <===> C

C ---e1Pool ---> D D ---e2Pool ----> E

All these are created on /kinetics, a cube compartment of vol 1e-18 m^3

References Shell::doAddMsg(), Shell::doCreate(), Shell::doSetClock(), Field< A >::get(), NA, PI, Field< A >::set(), and Id::value().

Referenced by testBuildStoich(), testRunGsolve(), testRunKsolve(), testSetupReac(), and testVolScaling().

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void testBuildStoich

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References Shell::doCreate(), Shell::doDelete(), Field< A >::get(), makeReacTest(), and Field< A >::set().

Referenced by testKsolve().

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void testFuncTerm

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References doubleEq(), FuncTerm::setExpr(), and FuncTerm::setReactantIndex().

Referenced by testKsolve().

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void testKsolve

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References testBuildStoich(), testFuncTerm(), testRunGsolve(), testRunKsolve(), and testSetupReac().

Referenced by nonMpiTests().

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void testKsolveProcess

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void testRunGsolve

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References Shell::doCreate(), Shell::doDelete(), Shell::doReinit(), Shell::doSetClock(), Shell::doStart(), Shell::doUseClock(), makeReacTest(), NA, PI, SetGet2< A1, A2 >::set(), and Field< A >::set().

Referenced by testKsolve().

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void testRunKsolve

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References Shell::doCreate(), Shell::doDelete(), Shell::doReinit(), Shell::doSetClock(), Shell::doStart(), Shell::doUseClock(), makeReacTest(), SetGet2< A1, A2 >::set(), and Field< A >::set().

Referenced by testKsolve().

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void testSetupReac

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References Shell::doDelete(), Shell::doReinit(), Shell::doStart(), and makeReacTest().

Referenced by testKsolve().

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