ZombieCompartment Class Reference

#include <ZombieCompartment.h>

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List of all members.

Public Member Functions
	ZombieCompartment ()
virtual	~ZombieCompartment ()
void	vSetVm (const Eref &e, double Vm)
double	vGetVm (const Eref &e) const
void	vSetEm (const Eref &e, double Em)
double	vGetEm (const Eref &e) const
void	vSetCm (const Eref &e, double Cm)
double	vGetCm (const Eref &e) const
void	vSetRm (const Eref &e, double Rm)
double	vGetRm (const Eref &e) const
void	vSetRa (const Eref &e, double Ra)
double	vGetRa (const Eref &e) const
double	vGetIm (const Eref &e) const
void	vSetInject (const Eref &e, double Inject)
double	vGetInject (const Eref &e) const
void	vSetInitVm (const Eref &e, double initVm)
double	vGetInitVm (const Eref &e) const
void	dummy (const Eref &e, ProcPtr p)
void	vProcess (const Eref &e, ProcPtr p)
void	vReinit (const Eref &e, ProcPtr p)
void	vInitProc (const Eref &e, ProcPtr p)
void	vInitReinit (const Eref &e, ProcPtr p)
void	vHandleChannel (const Eref &e, double Gk, double Ek)
void	vHandleRaxial (double Ra, double Vm)
void	vHandleAxial (double Vm)
void	vInjectMsg (const Eref &e, double current)
void	vRandInject (const Eref &e, double prob, double current)
void	vSetSolver (const Eref &e, Id hsolve)
	Assigns the solver to the zombie.
Static Public Member Functions
static const Cinfo *	initCinfo ()

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Detailed Description

Zombie object that lets HSolve do its calculations, while letting the user interact with this object as if it were the original object.

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Constructor & Destructor Documentation

ZombieCompartment::ZombieCompartment

(

)

ZombieCompartment::~ZombieCompartment

(

)

[virtual]

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Member Function Documentation

void ZombieCompartment::dummy	(	const Eref &	e,
		ProcPtr	p
	)

const Cinfo * ZombieCompartment::initCinfo

(

)

[static]

Initializes the class info.

The initCinfo() function sets up the Compartment class. This function uses the common trick of having an internal static value which is created the first time the function is called. There are several static arrays set up here. The ones which use SharedFinfos are for shared messages where multiple kinds of information go along the same connection.

Reimplemented from moose::CompartmentBase.

double ZombieCompartment::vGetCm

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getCm(), and Eref::id().

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double ZombieCompartment::vGetEm

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getEm(), and Eref::id().

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double ZombieCompartment::vGetIm

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getIm(), and Eref::id().

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double ZombieCompartment::vGetInitVm

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getInitVm(), and Eref::id().

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double ZombieCompartment::vGetInject

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getInject(), and Eref::id().

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double ZombieCompartment::vGetRa

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getRa(), and Eref::id().

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double ZombieCompartment::vGetRm

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getRm(), and Eref::id().

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double ZombieCompartment::vGetVm

(

const Eref &

e

)

const [virtual]

Implements moose::CompartmentBase.

References HSolve::getVm(), and Eref::id().

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void ZombieCompartment::vHandleAxial

(

double

Vm

)

[virtual]

handleAxial handles incoming axial message data.

Implements moose::CompartmentBase.

void ZombieCompartment::vHandleChannel	(	const Eref &	e,
		double	Gk,
		double	Ek
	)			[virtual]

handleChannel handles information coming from the channel to the compartment

Implements moose::CompartmentBase.

References HSolve::addGkEk(), and Eref::id().

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void ZombieCompartment::vHandleRaxial	(	double	Ra,
		double	Vm
	)			[virtual]

handleRaxial handles incoming raxial message data.

Implements moose::CompartmentBase.

void ZombieCompartment::vInitProc	(	const Eref &	e,
		ProcPtr	p
	)			[virtual]

The initProc function is for a second phase of 'process' operations. It sends the axial and raxial messages to other compartments. It has to be executed out of phase with the main process so that all compartments are equivalent and there is no calling order dependence in the results.

Implements moose::CompartmentBase.

void ZombieCompartment::vInitReinit	(	const Eref &	e,
		ProcPtr	p
	)			[virtual]

Empty function to do another reinit step out of phase with the main one. Nothing needs doing there.

Implements moose::CompartmentBase.

void ZombieCompartment::vInjectMsg	(	const Eref &	e,
		double	current
	)			[virtual]

Injects a constantly updated current into the compartment. Unlike the 'inject' field, this injected current is applicable only for a single timestep. So this is meant to be used as the destination of a message rather than as a one-time assignment.

Implements moose::CompartmentBase.

References HSolve::addInject(), and Eref::id().

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void ZombieCompartment::vProcess	(	const Eref &	e,
		ProcPtr	p
	)			[virtual]

The process function does the object updating and sends out messages to channels, nernsts, and so on.

Implements moose::CompartmentBase.

void ZombieCompartment::vRandInject	(	const Eref &	e,
		double	prob,
		double	current
	)			[virtual]

Injects a constantly updated current into the compartment, with a probability prob. Note that it isn't the current amplitude that is random, it is the presence or absence of the current that is probabilistic.

Implements moose::CompartmentBase.

void ZombieCompartment::vReinit	(	const Eref &	e,
		ProcPtr	p
	)			[virtual]

The reinit function reinitializes all fields.

Implements moose::CompartmentBase.

void ZombieCompartment::vSetCm	(	const Eref &	e,
		double	Cm
	)			[virtual]

Implements moose::CompartmentBase.

References Eref::id(), moose::CompartmentBase::rangeWarning(), and HSolve::setCm().

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void ZombieCompartment::vSetEm	(	const Eref &	e,
		double	Em
	)			[virtual]

Implements moose::CompartmentBase.

References Eref::id(), and HSolve::setEm().

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void ZombieCompartment::vSetInitVm	(	const Eref &	e,
		double	initVm
	)			[virtual]

Implements moose::CompartmentBase.

References Eref::id(), and HSolve::setInitVm().

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void ZombieCompartment::vSetInject	(	const Eref &	e,
		double	Inject
	)			[virtual]

Implements moose::CompartmentBase.

References Eref::id(), and HSolve::setInject().

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void ZombieCompartment::vSetRa	(	const Eref &	e,
		double	Ra
	)			[virtual]

Implements moose::CompartmentBase.

References Eref::id(), moose::CompartmentBase::rangeWarning(), and HSolve::setRa().

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void ZombieCompartment::vSetRm	(	const Eref &	e,
		double	Rm
	)			[virtual]

Implements moose::CompartmentBase.

References Eref::id(), moose::CompartmentBase::rangeWarning(), and HSolve::setRm().

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void ZombieCompartment::vSetSolver	(	const Eref &	e,
		Id	hsolve
	)			[virtual]

Assigns the solver to the zombie.

Reimplemented from moose::CompartmentBase.

References Element::cinfo(), Eref::data(), Id::element(), Id::eref(), Cinfo::isA(), and Id::path().

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void ZombieCompartment::vSetVm	(	const Eref &	e,
		double	Vm
	)			[virtual]

Implements moose::CompartmentBase.

References Eref::id(), and HSolve::setVm().

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The documentation for this class was generated from the following files:

• hsolve/ZombieCompartment.h
• hsolve/ZombieCompartment.cpp