HSolve Class Reference

#include <HSolve.h>

Inheritance diagram for HSolve:

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Collaboration diagram for HSolve:

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List of all members.

Public Member Functions
	HSolve ()
void	process (const Eref &hsolve, ProcPtr p)
void	reinit (const Eref &hsolve, ProcPtr p)
void	setSeed (Id seed)
Id	getSeed () const
void	setPath (const Eref &e, string path)
string	getPath (const Eref &e) const
void	setDt (double dt)
double	getDt () const
void	setCaAdvance (int caAdvance)
int	getCaAdvance () const
void	setVDiv (int vDiv)
int	getVDiv () const
void	setVMin (double vMin)
double	getVMin () const
void	setVMax (double vMax)
double	getVMax () const
void	setCaDiv (int caDiv)
int	getCaDiv () const
void	setCaMin (double caMin)
double	getCaMin () const
void	setCaMax (double caMax)
double	getCaMax () const
double	getInitVm (Id id) const
void	setInitVm (Id id, double value)
double	getVm (Id id) const
void	setVm (Id id, double value)
double	getCm (Id id) const
void	setCm (Id id, double value)
double	getEm (Id id) const
void	setEm (Id id, double value)
double	getRm (Id id) const
void	setRm (Id id, double value)
double	getRa (Id id) const
void	setRa (Id id, double value)
double	getIm (Id id) const
double	getIa (Id id) const
double	getInject (Id id) const
void	setInject (Id id, double value)
void	addInject (Id id, double value)
void	addGkEk (Id id, double v1, double v2)
	Interface to compartments.
void	setPowers (Id id, double Xpower, double Ypower, double Zpower)
	Interface to channels.
int	getInstant (Id id) const
void	setInstant (Id id, int instant)
double	getHHChannelGbar (Id id) const
void	setHHChannelGbar (Id id, double value)
double	getEk (Id id) const
void	setEk (Id id, double value)
double	getGk (Id id) const
void	setGk (Id id, double value)
double	getIk (Id id) const
double	getX (Id id) const
void	setX (Id id, double value)
double	getY (Id id) const
void	setY (Id id, double value)
double	getZ (Id id) const
void	setZ (Id id, double value)
void	setHHmodulation (Id id, double value)
	Assign scale factor for HH channel conductance.
double	getCa (Id id) const
	Interface to CaConc.
void	setCa (Id id, double Ca)
void	iCa (Id id, double iCa)
double	getCaBasal (Id id) const
void	setCaBasal (Id id, double CaBasal)
void	setTauB (Id id, double tau, double B)
double	getCaCeiling (Id id) const
void	setCaCeiling (Id id, double floor)
double	getCaFloor (Id id) const
void	setCaFloor (Id id, double floor)
Static Public Member Functions
static const Cinfo *	initCinfo ()
	Interface to external channels.
static const std::set< string > &	handledClasses ()
static void	deleteIncomingMessages (Element *orig, const string finfo)

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Detailed Description

HSolve adapts the integrator HSolveActive into a MOOSE class.

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Constructor & Destructor Documentation

HSolve::HSolve

(

)

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Member Function Documentation

void HSolve::addGkEk	(	Id	id,
		double	v1,
		double	v2
	)

Interface to compartments.

References HSolveActive::externalCurrent_.

Referenced by ZombieCompartment::vHandleChannel().

void HSolve::addInject	(	Id	id,
		double	value
	)

References HSolvePassive::inject_, and HinesMatrix::nCompt_.

Referenced by ZombieCompartment::vInjectMsg().

static void HSolve::deleteIncomingMessages	(	Element *	orig,
		const string	finfo
	)			[static]

Delete messages coming into this particular element if its class that is handled by HSolve

double HSolve::getCa

(

Id

id

)

const

Interface to CaConc.

References HSolveActive::ca_, and HSolveActive::caConc_.

Referenced by ZombieCaConc::vGetCa().

int HSolve::getCaAdvance

(

)

const

References HSolveActive::caAdvance_.

Referenced by initCinfo().

double HSolve::getCaBasal

(

Id

id

)

const

References HSolveActive::caConc_.

Referenced by ZombieCaConc::vGetCaBasal().

double HSolve::getCaCeiling

(

Id

id

)

const

References HSolveActive::caConc_.

Referenced by ZombieCaConc::vGetCeiling().

int HSolve::getCaDiv

(

)

const

References HSolveActive::caDiv_.

Referenced by initCinfo().

double HSolve::getCaFloor

(

Id

id

)

const

References HSolveActive::caConc_.

Referenced by ZombieCaConc::vGetFloor().

double HSolve::getCaMax

(

)

const

References HSolveActive::caMax_.

Referenced by initCinfo().

double HSolve::getCaMin

(

)

const

References HSolveActive::caMin_.

Referenced by initCinfo().

double HSolve::getCm

(

Id

id

)

const

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vGetCm().

double HSolve::getDt

(

)

const

Referenced by initCinfo().

double HSolve::getEk

(

Id

id

)

const

References HSolveActive::current_.

Referenced by ZombieHHChannel::vGetEk().

double HSolve::getEm

(

Id

id

)

const

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vGetEm().

double HSolve::getGk

(

Id

id

)

const

References HSolveActive::current_.

Referenced by ZombieHHChannel::vGetGk().

double HSolve::getHHChannelGbar

(

Id

id

)

const

References HSolveActive::channel_.

Referenced by ZombieHHChannel::vGetGbar().

double HSolve::getIa

(

Id

id

)

const

double HSolve::getIk

(

Id

id

)

const

References HSolveActive::chan2compt_, HSolveActive::current_, and HSolvePassive::V_.

Referenced by ZombieHHChannel::vGetIk().

double HSolve::getIm

(

Id

id

)

const

References HSolvePassive::compartment_, HSolveActive::current_, HSolveActive::currentBoundary_, HinesMatrix::nCompt_, HSolvePassive::tree_, and HSolvePassive::V_.

Referenced by ZombieCompartment::vGetIm().

double HSolve::getInitVm

(

Id

id

)

const

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vGetInitVm().

double HSolve::getInject

(

Id

id

)

const

References HSolvePassive::inject_, and HinesMatrix::nCompt_.

Referenced by ZombieCompartment::vGetInject().

int HSolve::getInstant

(

Id

id

)

const

References HSolveActive::channel_.

Referenced by ZombieHHChannel::vGetInstant().

string HSolve::getPath

(

const Eref &

e

)

const

Path to the compartments

Referenced by initCinfo().

double HSolve::getRa

(

Id

id

)

const

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vGetRa().

double HSolve::getRm

(

Id

id

)

const

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vGetRm().

Id HSolve::getSeed

(

)

const

For searching for compartments: seed is the starting compt.

Referenced by initCinfo().

int HSolve::getVDiv

(

)

const

References HSolveActive::vDiv_.

Referenced by initCinfo().

double HSolve::getVm

(

Id

id

)

const

References HSolvePassive::V_.

Referenced by ZombieCompartment::vGetVm().

double HSolve::getVMax

(

)

const

References HSolveActive::vMax_.

Referenced by initCinfo().

double HSolve::getVMin

(

)

const

References HSolveActive::vMin_.

Referenced by initCinfo().

double HSolve::getX

(

Id

id

)

const

References HSolveActive::chan2state_, HSolveActive::channel_, and HSolveActive::state_.

Referenced by ZombieHHChannel::vGetX().

double HSolve::getY

(

Id

id

)

const

References HSolveActive::chan2state_, HSolveActive::channel_, and HSolveActive::state_.

Referenced by ZombieHHChannel::vGetY().

double HSolve::getZ

(

Id

id

)

const

References HSolveActive::chan2state_, HSolveActive::channel_, and HSolveActive::state_.

Referenced by ZombieHHChannel::vGetZ().

const set< string > & HSolve::handledClasses

(

)

[static]

Returns the set of classes "handled" by HSolve

void HSolve::iCa	(	Id	id,
		double	iCa
	)

References HSolveActive::caActivation_, and HSolveActive::caConc_.

Referenced by ZombieCaConc::vCurrent().

const Cinfo * HSolve::initCinfo

(

)

[static]

Interface to external channels.

References getCaAdvance(), getCaDiv(), getCaMax(), getCaMin(), getDt(), getPath(), getSeed(), getVDiv(), getVMax(), getVMin(), Neutral::initCinfo(), process(), reinit(), setCaAdvance(), setCaDiv(), setCaMax(), setCaMin(), setDt(), setPath(), setSeed(), setVDiv(), setVMax(), and setVMin().

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void HSolve::process	(	const Eref &	hsolve,
		ProcPtr	p
	)

References HSolveActive::step().

Referenced by initCinfo().

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void HSolve::reinit	(	const Eref &	hsolve,
		ProcPtr	p
	)

References ProcInfo::dt.

Referenced by initCinfo().

void HSolve::setCa	(	Id	id,
		double	Ca
	)

References HSolveActive::ca_, and HSolveActive::caConc_.

Referenced by ZombieCaConc::vSetCa(), and ZombieCaConc::vSetCaBasal().

void HSolve::setCaAdvance

(

int

caAdvance

)

References HSolveActive::caAdvance_.

Referenced by initCinfo().

void HSolve::setCaBasal	(	Id	id,
		double	CaBasal
	)

References HSolveActive::caConc_.

void HSolve::setCaCeiling	(	Id	id,
		double	floor
	)

References HSolveActive::caConc_.

Referenced by ZombieCaConc::vSetCeiling().

void HSolve::setCaDiv

(

int

caDiv

)

References HSolveActive::caDiv_.

Referenced by initCinfo().

void HSolve::setCaFloor	(	Id	id,
		double	floor
	)

References HSolveActive::caConc_.

Referenced by ZombieCaConc::vSetFloor().

void HSolve::setCaMax

(

double

caMax

)

References HSolveActive::caMax_.

Referenced by initCinfo().

void HSolve::setCaMin

(

double

caMin

)

References HSolveActive::caMin_.

Referenced by initCinfo().

void HSolve::setCm	(	Id	id,
		double	value
	)

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vSetCm().

void HSolve::setDt

(

double

dt

)

Referenced by initCinfo().

void HSolve::setEk	(	Id	id,
		double	value
	)

References HSolveActive::current_.

Referenced by ZombieHHChannel::vSetEk().

void HSolve::setEm	(	Id	id,
		double	value
	)

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vSetEm().

void HSolve::setGk	(	Id	id,
		double	value
	)

References HSolveActive::current_.

Referenced by ZombieHHChannel::vSetGk().

void HSolve::setHHChannelGbar	(	Id	id,
		double	value
	)

References HSolveActive::channel_.

Referenced by ZombieHHChannel::vSetGbar().

void HSolve::setHHmodulation	(	Id	id,
		double	value
	)

Assign scale factor for HH channel conductance.

References HSolveActive::channel_.

Referenced by ZombieHHChannel::vSetModulation().

void HSolve::setInitVm	(	Id	id,
		double	value
	)

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vSetInitVm().

void HSolve::setInject	(	Id	id,
		double	value
	)

References HSolvePassive::inject_, and HinesMatrix::nCompt_.

Referenced by ZombieCompartment::vSetInject().

void HSolve::setInstant	(	Id	id,
		int	instant
	)

References HSolveActive::channel_.

Referenced by ZombieHHChannel::vSetInstant().

void HSolve::setPath	(	const Eref &	e,
		string	path
	)

Referenced by initCinfo().

void HSolve::setPowers	(	Id	id,
		double	Xpower,
		double	Ypower,
		double	Zpower
	)

Interface to channels.

References HSolveActive::channel_.

Referenced by ZombieHHChannel::vSetXpower(), ZombieHHChannel::vSetYpower(), and ZombieHHChannel::vSetZpower().

void HSolve::setRa	(	Id	id,
		double	value
	)

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vSetRa().

void HSolve::setRm	(	Id	id,
		double	value
	)

References HSolvePassive::tree_.

Referenced by ZombieCompartment::vSetRm().

void HSolve::setSeed

(

Id

seed

)

References Element::cinfo(), Id::element(), Cinfo::isA(), and Id::path().

Referenced by initCinfo().

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void HSolve::setTauB	(	Id	id,
		double	tau,
		double	B
	)

References HSolveActive::caConc_.

Referenced by ZombieCaConc::vSetB(), and ZombieCaConc::vSetTau().

void HSolve::setVDiv

(

int

vDiv

)

References HSolveActive::vDiv_.

Referenced by initCinfo().

void HSolve::setVm	(	Id	id,
		double	value
	)

References HSolvePassive::V_.

Referenced by ZombieCompartment::vSetVm().

void HSolve::setVMax

(

double

vMax

)

References HSolveActive::vMax_.

Referenced by initCinfo().

void HSolve::setVMin

(

double

vMin

)

References HSolveActive::vMin_.

Referenced by initCinfo().

void HSolve::setX	(	Id	id,
		double	value
	)

References HSolveActive::chan2state_, HSolveActive::channel_, and HSolveActive::state_.

Referenced by ZombieHHChannel::vSetX().

void HSolve::setY	(	Id	id,
		double	value
	)

References HSolveActive::chan2state_, HSolveActive::channel_, and HSolveActive::state_.

Referenced by ZombieHHChannel::vSetY().

void HSolve::setZ	(	Id	id,
		double	value
	)

References HSolveActive::chan2state_, HSolveActive::channel_, and HSolveActive::state_.

Referenced by ZombieHHChannel::vSetZ().

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The documentation for this class was generated from the following files:

• hsolve/HSolve.h
• hsolve/HSolve.cpp
• hsolve/HSolveInterface.cpp