ReadSwc Class Reference

#include <ReadSwc.h>

List of all members.

Public Member Functions
	ReadSwc (const string &fname)
bool	validate () const
void	assignKids ()
void	cleanZeroLength ()
void	parseBranches ()
void	traverseBranch (const SwcSegment &s, double &len, double &L, vector< int > &cable) const
bool	build (Id parent, double lambda, double RM, double RA, double CM)
void	diagnostics () const

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Detailed Description

This class is used to read in SWC files as found in NeuroMorph.org and other places. Note that these are only passive models at this stage.

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Constructor & Destructor Documentation

ReadSwc::ReadSwc

(

const string &

fname

)

Each line is of the form n T x y z R P

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Member Function Documentation

void ReadSwc::assignKids

(

)

References SwcSegment::myIndex(), and SwcSegment::parent().

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bool ReadSwc::build	(	Id	parent,
		double	lambda,
		double	RM,
		double	RA,
		double	CM
	)

References Shell::doAddMsg(), makeCompt(), SwcSegment::myIndex(), SwcSegment::parent(), and SwcBranch::segs_.

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void ReadSwc::cleanZeroLength

(

)

References SwcSegment::distance(), EPSILON, SwcSegment::kids(), SwcSegment::myIndex(), SwcSegment::parent(), SwcSegment::replaceKids(), SwcSegment::setBad(), and SwcSegment::setParent().

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void ReadSwc::diagnostics

(

)

const

References SwcSegment::type(), and SwcSegment::typeName.

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void ReadSwc::parseBranches

(

)

References SwcSegment::kids(), SwcSegment::OK(), and traverseBranch().

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void ReadSwc::traverseBranch	(	const SwcSegment &	s,
		double &	len,
		double &	L,
		vector< int > &	cable
	)			const

Referenced by parseBranches().

bool ReadSwc::validate

(

)

const

References SwcSegment::myIndex(), SwcSegment::parent(), and SwcSegment::radius().

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The documentation for this class was generated from the following files:

• biophysics/ReadSwc.h
• biophysics/ReadSwc.cpp