HSolvePassive Class Reference

#include <HSolvePassive.h>

Inheritance diagram for HSolvePassive:

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Collaboration diagram for HSolvePassive:

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List of all members.

Public Member Functions
void	setup (Id seed, double dt)
void	solve ()
Protected Member Functions
void	updateMatrix ()
void	forwardEliminate ()
void	backwardSubstitute ()
Protected Attributes
vector< CompartmentStruct >	compartment_
vector< Id >	compartmentId_
vector< double >	V_
vector< TreeNodeStruct >	tree_
map< unsigned int, InjectStruct >	inject_

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Member Function Documentation

void HSolvePassive::backwardSubstitute

(

)

[protected]

References HinesMatrix::backOperand_, HinesMatrix::HS_, HinesMatrix::junction_, HinesMatrix::operand_, HinesMatrix::stage_, V_, and HinesMatrix::VMid_.

Referenced by solve(), and HSolveActive::step().

void HSolvePassive::forwardEliminate

(

)

[protected]

References HinesMatrix::HS_, HinesMatrix::junction_, HinesMatrix::operand_, and HinesMatrix::stage_.

Referenced by solve(), and HSolveActive::step().

void HSolvePassive::setup	(	Id	seed,
		double	dt
	)

Reimplemented in HSolveActive.

References HinesMatrix::dt_, and tree_.

void HSolvePassive::solve

(

)

References backwardSubstitute(), forwardEliminate(), and updateMatrix().

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void HSolvePassive::updateMatrix

(

)

[protected]

References compartment_, HinesMatrix::HJ_, HinesMatrix::HJCopy_, HinesMatrix::HS_, inject_, InjectStruct::injectBasal, InjectStruct::injectVarying, HinesMatrix::stage_, and V_.

Referenced by solve().

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Member Data Documentation

vector< CompartmentStruct > HSolvePassive::compartment_ [protected]

Referenced by HSolve::getIm(), and updateMatrix().

vector< Id > HSolvePassive::compartmentId_ [protected]

map< unsigned int, InjectStruct > HSolvePassive::inject_ [protected]

inject map. contains the list of compartments that have current injections into them.

Referenced by HSolve::addInject(), HSolve::getInject(), HSolve::setInject(), and updateMatrix().

vector< TreeNodeStruct > HSolvePassive::tree_ [protected]

Tree info. The tree is used to acquire various values during setup. It contains the user-defined original values of all compartment parameters. Therefore, it is also used during reinit.

Reimplemented from HinesMatrix.

Referenced by HSolve::getCm(), HSolve::getEm(), HSolve::getIm(), HSolve::getInitVm(), HSolve::getRa(), HSolve::getRm(), HSolve::setCm(), HSolve::setEm(), HSolve::setInitVm(), HSolve::setRa(), HSolve::setRm(), and setup().

vector< double > HSolvePassive::V_ [protected]

Compartment Vm. V_ is addressed using a compartment index. V_ stores the Vm value of each compartment.

Referenced by backwardSubstitute(), HSolve::getIk(), HSolve::getIm(), HSolve::getVm(), HSolve::setVm(), and updateMatrix().

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The documentation for this class was generated from the following files:

• hsolve/HSolvePassive.h
• hsolve/HSolvePassive.cpp