StochNOrder Class Reference

#include <RateTerm.h>

Inheritance diagram for StochNOrder:

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Collaboration diagram for StochNOrder:

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List of all members.

Public Member Functions
	StochNOrder (double k, vector< unsigned int > v)
double	operator() (const double *S) const
	Computes the rate. The argument is the molecule array.
RateTerm *	copyWithVolScaling (double vol, double sub, double prd) const

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Detailed Description

This is an unpleasant case, like the StochSecondOrderSingleSubstrate. Here we deal with the possibility that one or more of the substrates may be of order greater than one. If so, we need to diminish the N of each substrate by one for each time the substrate is factored into the rate.

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Constructor & Destructor Documentation

StochNOrder::StochNOrder	(	double	k,
		vector< unsigned int >	v
	)

Referenced by copyWithVolScaling().

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Member Function Documentation

RateTerm* StochNOrder::copyWithVolScaling	(	double	vol,
		double	sub,
		double	prd
	)			const [inline, virtual]

Duplicates rate term and then applies volume scaling. Arguments are volume of reference voxel, product of vol/refVol for all substrates: applied to R1 product of vol/refVol for all products: applied to R2

Note that unless the reaction is cross-compartment, the vol/refVol will be one.

Reimplemented from NOrder.

References ZeroOrder::k_, NA, StochNOrder(), and NOrder::v_.

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double StochNOrder::operator()

(

const double *

S

)

const [virtual]

Computes the rate. The argument is the molecule array.

Reimplemented from NOrder.

References ZeroOrder::k_, NOrder::v_, and y.

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The documentation for this class was generated from the following files:

• ksolve/RateTerm.h
• ksolve/RateTerm.cpp