Spine Class Reference

#include <Spine.h>

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List of all members.

Public Member Functions
	Spine ()
	Spine (const Neuron *parent)
Id	getShaft (const Eref &e) const
Id	getHead (const Eref &e) const
void	setShaftLength (const Eref &e, double len)
double	getShaftLength (const Eref &e) const
void	setShaftDiameter (const Eref &e, double dia)
double	getShaftDiameter (const Eref &e) const
void	setHeadLength (const Eref &e, double len)
double	getHeadLength (const Eref &e) const
void	setHeadDiameter (const Eref &e, double dia)
double	getHeadDiameter (const Eref &e) const
void	setTotalLength (const Eref &e, double len)
double	getTotalLength (const Eref &e) const
void	setAngle (const Eref &e, double theta)
double	getAngle (const Eref &e) const
void	setInclination (const Eref &e, double phi)
double	getInclination (const Eref &e) const
Static Public Member Functions
static const Cinfo *	initCinfo ()

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Detailed Description

The Spine is a dendritic spine, typically with 2 compartments, the shaft and the head. It is a FieldElement, so it gets all its values from the parent Neuron. Later we can put in a maturation profile, so that a linear number from 0 to 1 will define all the stages of spine growth from stub to filopodium to mature spine.

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Constructor & Destructor Documentation

Spine::Spine

(

)

Spine::Spine

(

const Neuron *

parent

)

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Member Function Documentation

double Spine::getAngle

(

const Eref &

e

)

const

Referenced by initCinfo().

Id Spine::getHead

(

const Eref &

e

)

const

double Spine::getHeadDiameter

(

const Eref &

e

)

const

References Eref::fieldIndex(), and Neuron::spineIds().

Referenced by initCinfo().

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double Spine::getHeadLength

(

const Eref &

e

)

const

References Eref::fieldIndex(), and Neuron::spineIds().

Referenced by getTotalLength(), initCinfo(), and setTotalLength().

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double Spine::getInclination

(

const Eref &

e

)

const

Referenced by initCinfo().

Id Spine::getShaft

(

const Eref &

e

)

const

double Spine::getShaftDiameter

(

const Eref &

e

)

const

References Eref::fieldIndex(), and Neuron::spineIds().

Referenced by initCinfo().

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double Spine::getShaftLength

(

const Eref &

e

)

const

References Eref::fieldIndex(), and Neuron::spineIds().

Referenced by getTotalLength(), initCinfo(), and setTotalLength().

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double Spine::getTotalLength

(

const Eref &

e

)

const

References getHeadLength(), and getShaftLength().

Referenced by initCinfo().

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const Cinfo * Spine::initCinfo

(

)

[static]

References getAngle(), getHeadDiameter(), getHeadLength(), getInclination(), getShaftDiameter(), getShaftLength(), getTotalLength(), Neutral::initCinfo(), setAngle(), setHeadDiameter(), setHeadLength(), setInclination(), setShaftDiameter(), setShaftLength(), and setTotalLength().

Referenced by Neuron::initCinfo().

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void Spine::setAngle	(	const Eref &	e,
		double	theta
	)

Referenced by initCinfo().

void Spine::setHeadDiameter	(	const Eref &	e,
		double	dia
	)

References Eref::fieldIndex(), Neuron::scaleBufAndRates(), Neuron::scaleHeadDiffusion(), and Neuron::spineIds().

Referenced by initCinfo().

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void Spine::setHeadLength	(	const Eref &	e,
		double	len
	)

References Eref::fieldIndex(), Neuron::scaleBufAndRates(), Neuron::scaleHeadDiffusion(), and Neuron::spineIds().

Referenced by initCinfo(), and setTotalLength().

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void Spine::setInclination	(	const Eref &	e,
		double	phi
	)

Referenced by initCinfo().

void Spine::setShaftDiameter	(	const Eref &	e,
		double	dia
	)

References Eref::fieldIndex(), Neuron::scaleShaftDiffusion(), and Neuron::spineIds().

Referenced by initCinfo().

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void Spine::setShaftLength	(	const Eref &	e,
		double	len
	)

References Eref::fieldIndex(), Neuron::scaleShaftDiffusion(), and Neuron::spineIds().

Referenced by initCinfo(), and setTotalLength().

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void Spine::setTotalLength	(	const Eref &	e,
		double	len
	)

References getHeadLength(), getShaftLength(), setHeadLength(), and setShaftLength().

Referenced by initCinfo().

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The documentation for this class was generated from the following files:

• biophysics/Spine.h
• biophysics/Spine.cpp