ReacBase Class Reference

#include <ReacBase.h>

Inheritance diagram for ReacBase:

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List of all members.

Public Member Functions
	ReacBase ()
virtual	~ReacBase ()
void	setNumKf (const Eref &e, double v)
double	getNumKf (const Eref &e) const
void	setNumKb (const Eref &e, double v)
double	getNumKb (const Eref &e) const
void	setConcKf (const Eref &e, double v)
	set Kf in concentration units
double	getConcKf (const Eref &e) const
	get Kf in concentration units
void	setConcKb (const Eref &e, double v)
	set Kb in concentration units
double	getConcKb (const Eref &e) const
	get Kb in concentration units
unsigned int	getNumSub (const Eref &e) const
	Get number of substrates.
unsigned int	getNumPrd (const Eref &e) const
	Get number of products.
virtual void	vSetNumKf (const Eref &e, double v)=0
virtual double	vGetNumKf (const Eref &e) const =0
virtual void	vSetNumKb (const Eref &e, double v)=0
virtual double	vGetNumKb (const Eref &e) const =0
virtual void	vSetConcKf (const Eref &e, double v)=0
virtual double	vGetConcKf (const Eref &e) const =0
virtual void	vSetConcKb (const Eref &e, double v)=0
virtual double	vGetConcKb (const Eref &e) const =0
virtual void	setSolver (Id solver, Id orig)
	Assign solver info.
void	process (const Eref &e, ProcPtr p)
void	reinit (const Eref &e, ProcPtr p)
void	sub (double v)
void	prd (double v)
void	remesh (const Eref &e)
virtual void	vProcess (const Eref &e, ProcPtr p)
virtual void	vReinit (const Eref &e, ProcPtr p)
virtual void	vSub (double v)
virtual void	vPrd (double v)
virtual void	vRemesh (const Eref &e)
Static Public Member Functions
static void	zombify (Element *original, const Cinfo *zClass, Id solver)
static const Cinfo *	initCinfo ()
Protected Attributes
double	concKf_
double	concKb_

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Constructor & Destructor Documentation

ReacBase::ReacBase

(

)

ReacBase::~ReacBase

(

)

[virtual]

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Member Function Documentation

double ReacBase::getConcKb

(

const Eref &

e

)

const

get Kb in concentration units

References vGetConcKb().

Referenced by initCinfo(), and zombify().

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double ReacBase::getConcKf

(

const Eref &

e

)

const

get Kf in concentration units

References vGetConcKf().

Referenced by initCinfo(), and zombify().

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double ReacBase::getNumKb

(

const Eref &

e

)

const

References vGetNumKb().

Referenced by initCinfo().

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double ReacBase::getNumKf

(

const Eref &

e

)

const

References vGetNumKf().

Referenced by initCinfo().

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unsigned int ReacBase::getNumPrd

(

const Eref &

e

)

const

Get number of products.

References Eref::element(), and Element::getMsgAndFunc().

Referenced by initCinfo().

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unsigned int ReacBase::getNumSub

(

const Eref &

e

)

const

Get number of substrates.

References Eref::element(), and Element::getMsgAndFunc().

Referenced by initCinfo().

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const Cinfo * ReacBase::initCinfo

(

)

[static]

Reimplemented in Reac, and ZombieReac.

References getConcKb(), getConcKf(), getNumKb(), getNumKf(), getNumPrd(), getNumSub(), Neutral::initCinfo(), prd(), process(), reinit(), setConcKb(), setConcKf(), setNumKb(), setNumKf(), and sub().

Referenced by findParentComptOfReac(), ZombieReac::initCinfo(), and Reac::initCinfo().

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void ReacBase::prd

(

double

v

)

References vPrd().

Referenced by initCinfo(), and ZombieReac::setSolver().

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void ReacBase::process	(	const Eref &	e,
		ProcPtr	p
	)

References vProcess().

Referenced by initCinfo().

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void ReacBase::reinit	(	const Eref &	e,
		ProcPtr	p
	)

References vReinit().

Referenced by initCinfo().

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void ReacBase::remesh

(

const Eref &

e

)

References vRemesh().

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void ReacBase::setConcKb	(	const Eref &	e,
		double	v
	)

set Kb in concentration units

References vSetConcKb().

Referenced by initCinfo(), and zombify().

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void ReacBase::setConcKf	(	const Eref &	e,
		double	v
	)

set Kf in concentration units

References vSetConcKf().

Referenced by initCinfo(), and zombify().

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void ReacBase::setNumKb	(	const Eref &	e,
		double	v
	)

References vSetNumKb().

Referenced by initCinfo().

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void ReacBase::setNumKf	(	const Eref &	e,
		double	v
	)

References vSetNumKf().

Referenced by initCinfo().

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void ReacBase::setSolver	(	Id	solver,
		Id	orig
	)			[virtual]

Assign solver info.

Reimplemented in ZombieReac.

Referenced by zombify().

void ReacBase::sub

(

double

v

)

References vSub().

Referenced by initCinfo(), and ZombieReac::setSolver().

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virtual double ReacBase::vGetConcKb

(

const Eref &

e

)

const [pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by getConcKb().

virtual double ReacBase::vGetConcKf

(

const Eref &

e

)

const [pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by getConcKf().

virtual double ReacBase::vGetNumKb

(

const Eref &

e

)

const [pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by getNumKb().

virtual double ReacBase::vGetNumKf

(

const Eref &

e

)

const [pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by getNumKf().

void ReacBase::vPrd

(

double

v

)

[virtual]

Reimplemented in Reac.

Referenced by prd().

void ReacBase::vProcess	(	const Eref &	e,
		ProcPtr	p
	)			[virtual]

Reimplemented in Reac.

Referenced by process().

void ReacBase::vReinit	(	const Eref &	e,
		ProcPtr	p
	)			[virtual]

Reimplemented in Reac.

Referenced by reinit().

void ReacBase::vRemesh

(

const Eref &

e

)

[virtual]

Reimplemented in Reac.

Referenced by remesh().

virtual void ReacBase::vSetConcKb	(	const Eref &	e,
		double	v
	)			[pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by setConcKb().

virtual void ReacBase::vSetConcKf	(	const Eref &	e,
		double	v
	)			[pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by setConcKf().

virtual void ReacBase::vSetNumKb	(	const Eref &	e,
		double	v
	)			[pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by setNumKb().

virtual void ReacBase::vSetNumKf	(	const Eref &	e,
		double	v
	)			[pure virtual]

Implemented in Reac, and ZombieReac.

Referenced by setNumKf().

void ReacBase::vSub

(

double

v

)

[virtual]

Reimplemented in Reac.

Referenced by sub().

void ReacBase::zombify	(	Element *	original,
		const Cinfo *	zClass,
		Id	solver
	)			[static]

Zombification functions.

References Element::cinfo(), Eref::data(), getConcKb(), getConcKf(), Element::id(), Element::localDataStart(), Element::numLocalData(), setConcKb(), setConcKf(), setSolver(), and Element::zombieSwap().

Referenced by Stoich::unZombifyModel().

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Member Data Documentation

double ReacBase::concKb_ [protected]

Referenced by ZombieReac::vGetConcKb(), Reac::vGetConcKb(), ZombieReac::vGetNumKb(), Reac::vGetNumKb(), Reac::vReinit(), Reac::vRemesh(), ZombieReac::vSetConcKb(), Reac::vSetConcKb(), ZombieReac::vSetNumKb(), and Reac::vSetNumKb().

double ReacBase::concKf_ [protected]

Referenced by ZombieReac::vGetConcKf(), Reac::vGetConcKf(), ZombieReac::vGetNumKf(), Reac::vGetNumKf(), Reac::vReinit(), Reac::vRemesh(), ZombieReac::vSetConcKf(), Reac::vSetConcKf(), ZombieReac::vSetNumKf(), and Reac::vSetNumKf().

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The documentation for this class was generated from the following files:

• kinetics/ReacBase.h
• kinetics/ReacBase.cpp