MarkovSolverBase Class Reference

#include <MarkovSolverBase.h>

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List of all members.

Public Member Functions
	MarkovSolverBase ()
virtual	~MarkovSolverBase ()
Matrix	getQ () const
Vector	getState () const
Vector	getInitialState () const
void	setInitialState (Vector)
void	setXmin (double)
double	getXmin () const
void	setXmax (double)
double	getXmax () const
void	setXdivs (unsigned int)
unsigned int	getXdivs () const
double	getInvDx () const
void	setYmin (double)
double	getYmin () const
void	setYmax (double)
double	getYmax () const
void	setYdivs (unsigned int)
unsigned int	getYdivs () const
double	getInvDy () const
void	innerFillupTable (vector< unsigned int >, string, unsigned int, unsigned int)
void	fillupTable ()
virtual Matrix *	computeMatrixExponential ()
Vector *	bilinearInterpolate () const
Vector *	linearInterpolate () const
void	computeState ()
void	reinit (const Eref &, ProcPtr)
void	process (const Eref &, ProcPtr)
void	handleVm (double)
void	handleLigandConc (double)
void	init (Id, double)
Static Public Member Functions
static const Cinfo *	initCinfo ()
Protected Attributes
Matrix *	Q_

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Constructor & Destructor Documentation

MarkovSolverBase::MarkovSolverBase

(

)

MarkovSolverBase::~MarkovSolverBase

(

)

[virtual]

References Q_.

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Member Function Documentation

Vector * MarkovSolverBase::bilinearInterpolate

(

)

const

References vecMatMul(), and vecVecScalAdd().

Referenced by computeState().

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Matrix * MarkovSolverBase::computeMatrixExponential

(

)

[virtual]

Reimplemented in MarkovSolver.

Referenced by fillupTable().

void MarkovSolverBase::computeState

(

)

References MarkovRateTable::areAllRates1d(), MarkovRateTable::areAnyRates2d(), MarkovRateTable::areAnyRatesLigandDep(), MarkovRateTable::areAnyRatesVoltageDep(), bilinearInterpolate(), and linearInterpolate().

Referenced by process().

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void MarkovSolverBase::fillupTable

(

)

References MarkovRateTable::areAllRates1d(), MarkovRateTable::areAllRatesConstant(), MarkovRateTable::areAllRatesLigandDep(), MarkovRateTable::areAllRatesVoltageDep(), MarkovRateTable::areAnyRates2d(), MarkovRateTable::areAnyRatesLigandDep(), MarkovRateTable::areAnyRatesVoltageDep(), computeMatrixExponential(), MarkovRateTable::getListOf1dRates(), MarkovRateTable::getListOf2dRates(), MarkovRateTable::getListOfConstantRates(), MarkovRateTable::getListOfLigandRates(), MarkovRateTable::getListOfVoltageRates(), and innerFillupTable().

Referenced by init().

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Vector MarkovSolverBase::getInitialState

(

)

const

Referenced by initCinfo().

double MarkovSolverBase::getInvDx

(

)

const

Referenced by initCinfo().

double MarkovSolverBase::getInvDy

(

)

const

Referenced by initCinfo().

Matrix MarkovSolverBase::getQ

(

)

const

References Q_.

Referenced by initCinfo().

Vector MarkovSolverBase::getState

(

)

const

Referenced by initCinfo().

unsigned int MarkovSolverBase::getXdivs

(

)

const

Referenced by initCinfo().

double MarkovSolverBase::getXmax

(

)

const

Referenced by initCinfo().

double MarkovSolverBase::getXmin

(

)

const

Referenced by initCinfo().

unsigned int MarkovSolverBase::getYdivs

(

)

const

Referenced by initCinfo().

double MarkovSolverBase::getYmax

(

)

const

Referenced by initCinfo().

double MarkovSolverBase::getYmin

(

)

const

Referenced by initCinfo().

void MarkovSolverBase::handleLigandConc

(

double

ligandConc

)

Referenced by initCinfo().

void MarkovSolverBase::handleVm

(

double

Vm

)

Referenced by initCinfo().

void MarkovSolverBase::init	(	Id	rateTableId,
		double	dt
	)

References MarkovRateTable::areAllRates1d(), MarkovRateTable::areAllRatesLigandDep(), MarkovRateTable::areAllRatesVoltageDep(), MarkovRateTable::areAnyRates2d(), MarkovRateTable::areAnyRatesLigandDep(), MarkovRateTable::areAnyRatesVoltageDep(), Eref::data(), Id::eref(), fillupTable(), MarkovRateTable::getSize(), matAlloc(), Q_, and resize().

Referenced by initCinfo().

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const Cinfo * MarkovSolverBase::initCinfo

(

)

[static]

Reimplemented in MarkovSolver.

References getInitialState(), getInvDx(), getInvDy(), getQ(), getState(), getXdivs(), getXmax(), getXmin(), getYdivs(), getYmax(), getYmin(), handleLigandConc(), handleVm(), init(), Neutral::initCinfo(), process(), reinit(), setInitialState(), setXdivs(), setXmax(), setXmin(), setYdivs(), setYmax(), setYmin(), and stateOut().

Referenced by MarkovSolver::initCinfo().

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void MarkovSolverBase::innerFillupTable	(	vector< unsigned int >	,
		string	,
		unsigned	int,
		unsigned	int
	)

Referenced by fillupTable().

Vector * MarkovSolverBase::linearInterpolate

(

)

const

References MarkovRateTable::areAllRatesVoltageDep(), vecMatMul(), and vecVecScalAdd().

Referenced by computeState().

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void MarkovSolverBase::process	(	const Eref &	e,
		ProcPtr	p
	)

Reimplemented in MarkovSolver.

References computeState(), and stateOut().

Referenced by initCinfo().

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void MarkovSolverBase::reinit	(	const Eref &	e,
		ProcPtr	p
	)

Reimplemented in MarkovSolver.

References stateOut().

Referenced by initCinfo().

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void MarkovSolverBase::setInitialState

(

Vector

)

Referenced by initCinfo().

void MarkovSolverBase::setXdivs

(

unsigned int

xDivs

)

Referenced by initCinfo().

void MarkovSolverBase::setXmax

(

double

xMax

)

Referenced by initCinfo().

void MarkovSolverBase::setXmin

(

double

xMin

)

Referenced by initCinfo().

void MarkovSolverBase::setYdivs

(

unsigned int

yDivs

)

Referenced by initCinfo().

void MarkovSolverBase::setYmax

(

double

yMax

)

Referenced by initCinfo().

void MarkovSolverBase::setYmin

(

double

yMin

)

Referenced by initCinfo().

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Member Data Documentation

Matrix* MarkovSolverBase::Q_ [protected]

Referenced by MarkovSolver::computeMatrixExponential(), getQ(), init(), and ~MarkovSolverBase().

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The documentation for this class was generated from the following files:

• biophysics/MarkovSolverBase.h
• biophysics/MarkovSolverBase.cpp