MarkovRateTable Class Reference

#include <MarkovRateTable.h>

Public Member Functions
	MarkovRateTable ()
	~MarkovRateTable ()
VectorTable *	getVtChildTable (unsigned int, unsigned int) const
void	innerSetVtChildTable (unsigned int, unsigned int, VectorTable, unsigned int)
Interpol2D *	getInt2dChildTable (unsigned int, unsigned int) const
void	innerSetInt2dChildTable (unsigned int, unsigned int, Interpol2D)
double	lookup1dValue (unsigned int, unsigned int, double)
double	lookup1dIndex (unsigned int, unsigned int, unsigned int)
double	lookup2dValue (unsigned int, unsigned int, double, double)
double	lookup2dIndex (unsigned int, unsigned int, unsigned int, unsigned int)
void	updateRates ()
void	initConstantRates ()
vector< unsigned int >	getListOf1dRates ()
vector< unsigned int >	getListOf2dRates ()
vector< unsigned int >	getListOfLigandRates ()
vector< unsigned int >	getListOfVoltageRates ()
vector< unsigned int >	getListOfConstantRates ()
vector< vector< double > >	getQ () const
unsigned int	getSize () const
double	getVm () const
void	setVm (double)
double	getLigandConc () const
void	setLigandConc (double)
bool	isRateZero (unsigned int, unsigned int) const
bool	isRateConstant (unsigned int, unsigned int) const
bool	isRate1d (unsigned int, unsigned int) const
bool	isRateLigandDep (unsigned int, unsigned int) const
bool	isRate2d (unsigned int, unsigned int) const
bool	areIndicesOutOfBounds (unsigned int, unsigned int) const
bool	areAllRatesConstant ()
bool	areAnyRates1d ()
bool	areAllRates1d ()
bool	areAnyRates2d ()
bool	areAllRates2d ()
bool	areAnyRatesLigandDep ()
bool	areAllRatesLigandDep ()
bool	areAnyRatesVoltageDep ()
bool	areAllRatesVoltageDep ()
void	process (const Eref &, ProcPtr)
void	reinit (const Eref &, ProcPtr)
void	init (unsigned int)
void	handleVm (double)
void	handleLigandConc (double)
void	setVtChildTable (unsigned int, unsigned int, Id, unsigned int)
void	setInt2dChildTable (unsigned int, unsigned int, Id)
void	setConstantRate (unsigned int, unsigned int, double)
Static Public Member Functions
static const Cinfo *	initCinfo ()
Friends
istream &	operator>> (istream &, MarkovRateTable &)

Constructor & Destructor Documentation

MarkovRateTable::MarkovRateTable ( )

MarkovRateTable::~MarkovRateTable ( )

References isRate1d(), isRate2d(), and isRateConstant().

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Member Function Documentation

bool MarkovRateTable::areAllRates1d ( )

References areAnyRates1d(), and areAnyRates2d().

Referenced by areAllRatesLigandDep(), areAllRatesVoltageDep(), MarkovSolverBase::computeState(), MarkovSolverBase::fillupTable(), and MarkovSolverBase::init().

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bool MarkovRateTable::areAllRates2d ( )

References areAnyRates1d(), and areAnyRates2d().

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bool MarkovRateTable::areAllRatesConstant ( )

Referenced by MarkovSolverBase::fillupTable(), and process().

bool MarkovRateTable::areAllRatesLigandDep ( )

References areAllRates1d(), areAnyRatesLigandDep(), and areAnyRatesVoltageDep().

Referenced by MarkovSolverBase::fillupTable(), and MarkovSolverBase::init().

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bool MarkovRateTable::areAllRatesVoltageDep ( )

References areAllRates1d(), areAnyRatesLigandDep(), and areAnyRatesVoltageDep().

Referenced by MarkovSolverBase::fillupTable(), MarkovSolverBase::init(), and MarkovSolverBase::linearInterpolate().

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bool MarkovRateTable::areAnyRates1d ( )

Referenced by areAllRates1d(), and areAllRates2d().

bool MarkovRateTable::areAnyRates2d ( )

Referenced by areAllRates1d(), areAllRates2d(), MarkovSolverBase::computeState(), MarkovSolverBase::fillupTable(), and MarkovSolverBase::init().

bool MarkovRateTable::areAnyRatesLigandDep ( )

Referenced by areAllRatesLigandDep(), areAllRatesVoltageDep(), MarkovSolverBase::computeState(), MarkovSolverBase::fillupTable(), and MarkovSolverBase::init().

bool MarkovRateTable::areAnyRatesVoltageDep ( )

Referenced by areAllRatesLigandDep(), areAllRatesVoltageDep(), MarkovSolverBase::computeState(), MarkovSolverBase::fillupTable(), and MarkovSolverBase::init().

bool MarkovRateTable::areIndicesOutOfBounds	(	unsigned int	i,
		unsigned int	j
	)			const

Referenced by innerSetInt2dChildTable(), innerSetVtChildTable(), lookup1dIndex(), lookup1dValue(), lookup2dIndex(), and lookup2dValue().

Interpol2D * MarkovRateTable::getInt2dChildTable	(	unsigned int	i,
		unsigned int	j
	)			const

References isRate2d().

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double MarkovRateTable::getLigandConc ( ) const

Referenced by initCinfo().

vector< unsigned int > MarkovRateTable::getListOf1dRates ( )

Referenced by MarkovSolverBase::fillupTable().

vector< unsigned int > MarkovRateTable::getListOf2dRates ( )

Referenced by MarkovSolverBase::fillupTable().

vector< unsigned int > MarkovRateTable::getListOfConstantRates ( )

Referenced by MarkovSolverBase::fillupTable().

vector< unsigned int > MarkovRateTable::getListOfLigandRates ( )

Referenced by MarkovSolverBase::fillupTable().

vector< unsigned int > MarkovRateTable::getListOfVoltageRates ( )

Referenced by MarkovSolverBase::fillupTable().

vector< vector< double > > MarkovRateTable::getQ ( ) const

Referenced by initCinfo().

unsigned int MarkovRateTable::getSize ( ) const

Referenced by MarkovSolverBase::init(), and initCinfo().

double MarkovRateTable::getVm ( ) const

Referenced by initCinfo().

VectorTable * MarkovRateTable::getVtChildTable	(	unsigned int	i,
		unsigned int	j
	)			const

References isRate1d(), and isRateConstant().

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void MarkovRateTable::handleLigandConc ( double ligandConc )

Referenced by initCinfo().

void MarkovRateTable::handleVm ( double Vm )

Referenced by initCinfo().

void MarkovRateTable::init ( unsigned int size )

Referenced by initCinfo().

const Cinfo * MarkovRateTable::initCinfo ( ) [static]

References getLigandConc(), getQ(), getSize(), getVm(), handleLigandConc(), handleVm(), init(), Neutral::initCinfo(), process(), reinit(), setConstantRate(), setInt2dChildTable(), setLigandConc(), setVm(), and setVtChildTable().

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void MarkovRateTable::initConstantRates ( )

References lookup1dValue().

Referenced by reinit().

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void MarkovRateTable::innerSetInt2dChildTable	(	unsigned int	i,
		unsigned int	j,
		Interpol2D	int2dTable
	)

References areIndicesOutOfBounds(), isRate1d(), isRate2d(), and isRateConstant().

Referenced by setInt2dChildTable().

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void MarkovRateTable::innerSetVtChildTable	(	unsigned int	i,
		unsigned int	j,
		VectorTable	vecTable,
		unsigned int	ligandFlag
	)

References areIndicesOutOfBounds(), isRate1d(), isRate2d(), and isRateConstant().

Referenced by setConstantRate(), and setVtChildTable().

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bool MarkovRateTable::isRate1d	(	unsigned int	i,
		unsigned int	j
	)			const

Referenced by getVtChildTable(), innerSetInt2dChildTable(), innerSetVtChildTable(), isRateLigandDep(), lookup1dIndex(), lookup1dValue(), operator>>(), and ~MarkovRateTable().

bool MarkovRateTable::isRate2d	(	unsigned int	i,
		unsigned int	j
	)			const

Referenced by getInt2dChildTable(), innerSetInt2dChildTable(), innerSetVtChildTable(), isRateConstant(), lookup2dIndex(), lookup2dValue(), operator>>(), and ~MarkovRateTable().

bool MarkovRateTable::isRateConstant	(	unsigned int	i,
		unsigned int	j
	)			const

References isRate2d(), and isRateZero().

Referenced by getVtChildTable(), innerSetInt2dChildTable(), innerSetVtChildTable(), lookup1dIndex(), lookup1dValue(), and ~MarkovRateTable().

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bool MarkovRateTable::isRateLigandDep	(	unsigned int	i,
		unsigned int	j
	)			const

References isRate1d().

Referenced by updateRates().

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bool MarkovRateTable::isRateZero	(	unsigned int	i,
		unsigned int	j
	)			const

Referenced by isRateConstant().

double MarkovRateTable::lookup1dIndex	(	unsigned int	i,
		unsigned int	j,
		unsigned int	xIndex
	)

References areIndicesOutOfBounds(), isRate1d(), and isRateConstant().

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double MarkovRateTable::lookup1dValue	(	unsigned int	i,
		unsigned int	j,
		double	x
	)

References areIndicesOutOfBounds(), isRate1d(), and isRateConstant().

Referenced by initConstantRates(), and updateRates().

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double MarkovRateTable::lookup2dIndex	(	unsigned int	i,
		unsigned int	j,
		unsigned int	xIndex,
		unsigned int	yIndex
	)

References areIndicesOutOfBounds(), and isRate2d().

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double MarkovRateTable::lookup2dValue	(	unsigned int	i,
		unsigned int	j,
		double	x,
		double	y
	)

References areIndicesOutOfBounds(), and isRate2d().

Referenced by updateRates().

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void MarkovRateTable::process	(	const Eref &	e,
		ProcPtr	info
	)

References areAllRatesConstant(), and updateRates().

Referenced by initCinfo().

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void MarkovRateTable::reinit	(	const Eref &	e,
		ProcPtr	info
	)

References initConstantRates().

Referenced by initCinfo().

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void MarkovRateTable::setConstantRate	(	unsigned int	i,
		unsigned int	j,
		double	rate
	)

References innerSetVtChildTable(), VectorTable::setDiv(), VectorTable::setMax(), VectorTable::setMin(), and VectorTable::setTable().

Referenced by initCinfo().

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void MarkovRateTable::setInt2dChildTable	(	unsigned int	i,
		unsigned int	j,
		Id	int2dTabId
	)

References Eref::data(), Id::eref(), and innerSetInt2dChildTable().

Referenced by initCinfo().

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void MarkovRateTable::setLigandConc ( double ligandConc )

Referenced by initCinfo().

void MarkovRateTable::setVm ( double Vm )

Referenced by initCinfo().

void MarkovRateTable::setVtChildTable	(	unsigned int	i,
		unsigned int	j,
		Id	vecTabId,
		unsigned int	ligandFlag
	)

References Eref::data(), Id::eref(), and innerSetVtChildTable().

Referenced by initCinfo().

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void MarkovRateTable::updateRates ( )

References doubleEq(), isRateLigandDep(), lookup1dValue(), and lookup2dValue().

Referenced by process().

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Friends And Related Function Documentation

istream& operator>>	(	istream &	,
		MarkovRateTable &
	)			`[friend]`

The documentation for this class was generated from the following files:

biophysics/MarkovRateTable.h
biophysics/MarkovRateTable.cpp

MarkovRateTable Class Reference

Public Member Functions

Static Public Member Functions

Friends

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation