, including all inherited members.
| addRow(unsigned int index, const vector< double > &entry, const vector< unsigned int > &colIndex) | MeshCompt | |
| buildDefaultMesh(const Eref &e, double volume, unsigned int numEntries) | ChemCompt | |
| buildJunction(ChemCompt *other, vector< VoxelJunction > &ret) | ChemCompt | |
| buildStencil() | CylMesh | |
| ChemCompt() | ChemCompt | |
| clearExtendedMeshEntryVolume() | MeshCompt | [virtual] |
| CylMesh() | CylMesh | |
| distance(double x, double y, double z) | ChemCompt | [static] |
| extendedMeshEntryVolume(unsigned int fid) const | CylMesh | [virtual] |
| extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj) | MeshCompt | |
| ChemCompt::extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj)=0 | ChemCompt | [pure virtual] |
| flipRet(vector< VoxelJunction > &ret) const | ChemCompt | |
| getChildConcs(const Eref &e, vector< double > &childConcs) const | ChemCompt | |
| getCoordinates(unsigned int fid) const | CylMesh | [virtual] |
| getCoords(const Eref &e) const | CylMesh | |
| getDiffLength(const Eref &e) const | CylMesh | |
| getDiffusionArea(unsigned int fid) const | CylMesh | [virtual] |
| getDiffusionScaling(unsigned int fid) const | CylMesh | [virtual] |
| getDimensions() const | ChemCompt | |
| getEntireVolume(const Eref &e) const | ChemCompt | |
| getMeshDimensions(unsigned int fid) const | CylMesh | [virtual] |
| getMeshEntryVolume(unsigned int fid) const | CylMesh | [virtual] |
| getMeshType(unsigned int fid) const | CylMesh | [virtual] |
| getMethod() const | ChemCompt | |
| getNeighbors(unsigned int fid) const | MeshCompt | [virtual] |
| getNumEntries() const | ChemCompt | |
| getOneVoxelVolume(const Eref &e, unsigned int voxel) const | ChemCompt | |
| getParentVoxel() const | CylMesh | [virtual] |
| getR0(const Eref &e) const | CylMesh | |
| getR1(const Eref &e) const | CylMesh | |
| getStencil() const | MeshCompt | |
| getStencilIndex(unsigned int row) const | ChemCompt | |
| getStencilRate(unsigned int row) const | ChemCompt | |
| getStencilRow(unsigned int meshIndex, const double **entry, const unsigned int **colIndex) const | MeshCompt | [virtual] |
| getTotLength() const | CylMesh | |
| getVoxelArea() const | CylMesh | [virtual] |
| getVoxelLength() const | CylMesh | [virtual] |
| getVoxelMidpoint() const | ChemCompt | |
| getVoxelVolume() const | ChemCompt | |
| getX0(const Eref &e) const | CylMesh | |
| getX1(const Eref &e) const | CylMesh | |
| getY0(const Eref &e) const | CylMesh | |
| getY1(const Eref &e) const | CylMesh | |
| getZ0(const Eref &e) const | CylMesh | |
| getZ1(const Eref &e) const | CylMesh | |
| handleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads) | ChemCompt | |
| indexToSpace(unsigned int index, double &x, double &y, double &z) const | CylMesh | [virtual] |
| initCinfo() | CylMesh | [static] |
| innerBuildDefaultMesh(const Eref &e, double volume, unsigned int numEntries) | CylMesh | [virtual] |
| innerGetDimensions() const | CylMesh | [virtual] |
| innerGetNumEntries() const | CylMesh | [virtual] |
| innerGetStencilRate(unsigned int row) const | MeshCompt | [virtual] |
| innerHandleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads) | CylMesh | [virtual] |
| innerHandleRequestMeshStats(const Eref &e, const SrcFinfo2< unsigned int, vector< double > > *meshStatsFinfo) | CylMesh | |
| innerResetStencil() | MeshCompt | [virtual] |
| innerSetCoords(const Eref &e, const vector< double > &v) | CylMesh | |
| innerSetNumEntries(unsigned int n) | CylMesh | [virtual] |
| lookupEntry(unsigned int index) | ChemCompt | |
| matchCubeMeshEntries(const CubeMesh *other, vector< VoxelJunction > &ret) const | CylMesh | |
| matchCylMeshEntries(const CylMesh *other, vector< VoxelJunction > &ret) const | CylMesh | |
| matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const | CylMesh | |
| MeshCompt::matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const =0 | ChemCompt | [pure virtual] |
| matchNeuroMeshEntries(const NeuroMesh *other, vector< VoxelJunction > &ret) const | CylMesh | |
| MeshCompt() | MeshCompt | |
| nearest(double x, double y, double z, unsigned int &index) const | CylMesh | [virtual] |
| nearest(double x, double y, double z, double &linePos, double &r) const | CylMesh | |
| resetStencil() | ChemCompt | |
| selectGridVolume(double h) const | CylMesh | |
| setChildConcs(const Eref &e, const vector< double > &childConcs, unsigned int start) const | ChemCompt | |
| setCoords(const Eref &e, vector< double > v) | CylMesh | |
| setDiffLength(const Eref &e, double v) | CylMesh | |
| setEntireVolume(const Eref &e, double volume) | ChemCompt | |
| setMeshEntryVolume(unsigned int fid, double volume) | ChemCompt | [virtual] |
| setMethod(string method) | ChemCompt | |
| setNumEntries(unsigned int num) | ChemCompt | |
| setOneVoxelVolume(const Eref &e, unsigned int voxel, double volume) | ChemCompt | |
| setR0(const Eref &e, double v) | CylMesh | |
| setR1(const Eref &e, double v) | CylMesh | |
| setStencilSize(unsigned int numRows, unsigned int numCols) | MeshCompt | |
| setVolumeNotRates(double volume) | ChemCompt | |
| setX0(const Eref &e, double v) | CylMesh | |
| setX1(const Eref &e, double v) | CylMesh | |
| setY0(const Eref &e, double v) | CylMesh | |
| setY1(const Eref &e, double v) | CylMesh | |
| setZ0(const Eref &e, double v) | CylMesh | |
| setZ1(const Eref &e, double v) | CylMesh | |
| transmitChange(const Eref &e) | CylMesh | |
| updateCoords(const Eref &e, const vector< double > &childConcs) | CylMesh | |
| vGetEntireVolume() const | CylMesh | [virtual] |
| vGetVoxelMidpoint() const | CylMesh | [virtual] |
| vGetVoxelVolume() const | CylMesh | [virtual] |
| voxelVolOut() | ChemCompt | [static] |
| vSetVolumeNotRates(double volume) | CylMesh | [virtual] |
| ~ChemCompt() | ChemCompt | [virtual] |
| ~CylMesh() | CylMesh | |
| ~MeshCompt() | MeshCompt | |
