, including all inherited members.
| ABUTX | CubeMesh | [static] |
| ABUTY | CubeMesh | [static] |
| ABUTZ | CubeMesh | [static] |
| addRow(unsigned int index, const vector< double > &entry, const vector< unsigned int > &colIndex) | MeshCompt | |
| addStoich(Id stoich) | CubeMesh | |
| assignVoxels(vector< pair< unsigned int, unsigned int > > &intersect, double xmin, double xmax, double ymin, double ymax, double zmin, double zmax) const | CubeMesh | |
| buildDefaultMesh(const Eref &e, double volume, unsigned int numEntries) | ChemCompt | |
| buildJunction(ChemCompt *other, vector< VoxelJunction > &ret) | ChemCompt | |
| buildMesh(Id geom, double x, double y, double z) | CubeMesh | |
| buildStencil() | CubeMesh | |
| ChemCompt() | ChemCompt | |
| clearExtendedMeshEntryVolume() | MeshCompt | [virtual] |
| compareMeshSpacing(const CubeMesh *other) const | CubeMesh | |
| CubeMesh() | CubeMesh | |
| defineIntersection(const CubeMesh *other, double &xmin, double &xmax, double &ymin, double &ymax, double &zmin, double &zmax) const | CubeMesh | |
| deriveM2sFromS2m() | CubeMesh | |
| deriveS2mFromM2s() | CubeMesh | |
| distance(double x, double y, double z) | ChemCompt | [static] |
| EMPTY | CubeMesh | [static] |
| extendedMeshEntryVolume(unsigned int fid) const | CubeMesh | [virtual] |
| extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj) | MeshCompt | |
| ChemCompt::extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj)=0 | ChemCompt | [pure virtual] |
| fillSpaceToMeshLookup() | CubeMesh | |
| fillThreeDimSurface() | CubeMesh | |
| fillTwoDimSurface() | CubeMesh | |
| flipRet(vector< VoxelJunction > &ret) const | ChemCompt | |
| getAlwaysDiffuse() const | CubeMesh | |
| getChildConcs(const Eref &e, vector< double > &childConcs) const | ChemCompt | |
| getCoordinates(unsigned int fid) const | CubeMesh | [virtual] |
| getCoords(const Eref &e) const | CubeMesh | |
| getDiffusionArea(unsigned int fid) const | CubeMesh | [virtual] |
| getDiffusionScaling(unsigned int fid) const | CubeMesh | [virtual] |
| getDimensions() const | ChemCompt | |
| getDx() const | CubeMesh | |
| getDy() const | CubeMesh | |
| getDz() const | CubeMesh | |
| getEntireVolume(const Eref &e) const | ChemCompt | |
| getIsToroid() const | CubeMesh | |
| getMeshDimensions(unsigned int fid) const | CubeMesh | [virtual] |
| getMeshEntryVolume(unsigned int fid) const | CubeMesh | [virtual] |
| getMeshToSpace() const | CubeMesh | |
| getMeshType(unsigned int fid) const | CubeMesh | [virtual] |
| getMethod() const | ChemCompt | |
| getNeighbors(unsigned int fid) const | MeshCompt | [virtual] |
| getNumEntries() const | ChemCompt | |
| getNx() const | CubeMesh | |
| getNy() const | CubeMesh | |
| getNz() const | CubeMesh | |
| getOneVoxelVolume(const Eref &e, unsigned int voxel) const | ChemCompt | |
| getParentVoxel() const | CubeMesh | [virtual] |
| getPreserveNumEntries() const | CubeMesh | |
| getSpaceToMesh() const | CubeMesh | |
| getStencil() const | MeshCompt | |
| getStencilIndex(unsigned int row) const | ChemCompt | |
| getStencilRate(unsigned int row) const | ChemCompt | |
| getStencilRow(unsigned int meshIndex, const double **entry, const unsigned int **colIndex) const | MeshCompt | [virtual] |
| getSurface() const | CubeMesh | |
| getVoxelArea() const | CubeMesh | [virtual] |
| getVoxelLength() const | CubeMesh | [virtual] |
| getVoxelMidpoint() const | ChemCompt | |
| getVoxelVolume() const | ChemCompt | |
| getX0() const | CubeMesh | |
| getX1() const | CubeMesh | |
| getY0() const | CubeMesh | |
| getY1() const | CubeMesh | |
| getZ0() const | CubeMesh | |
| getZ1() const | CubeMesh | |
| handleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads) | ChemCompt | |
| indexToSpace(unsigned int index, double &x, double &y, double &z) const | CubeMesh | [virtual] |
| initCinfo() | CubeMesh | [static] |
| innerBuildDefaultMesh(const Eref &e, double volume, unsigned int numEntries) | CubeMesh | [virtual] |
| innerGetDimensions() const | CubeMesh | [virtual] |
| innerGetNumEntries() const | CubeMesh | [virtual] |
| innerGetStencilRate(unsigned int row) const | MeshCompt | [virtual] |
| innerHandleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads) | CubeMesh | [virtual] |
| innerHandleRequestMeshStats(const Eref &e, const SrcFinfo2< unsigned int, vector< double > > *meshStatsFinfo) | CubeMesh | |
| innerResetStencil() | MeshCompt | [virtual] |
| innerSetCoords(const vector< double > &v) | CubeMesh | |
| innerSetNumEntries(unsigned int n) | CubeMesh | [virtual] |
| isInsideCuboid(double x, double y, double z) const | CubeMesh | |
| isInsideSpheroid(double x, double y, double z) const | CubeMesh | |
| lookupEntry(unsigned int index) | ChemCompt | |
| matchAllEntries(const CubeMesh *other, vector< VoxelJunction > &ret) const | CubeMesh | |
| matchCubeMeshEntries(const CubeMesh *other, vector< VoxelJunction > &ret) const | CubeMesh | |
| matchCylMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const | CubeMesh | |
| matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const | CubeMesh | |
| MeshCompt::matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const =0 | ChemCompt | [pure virtual] |
| MeshCompt() | MeshCompt | |
| MULTI | CubeMesh | [static] |
| nearest(double x, double y, double z, unsigned int &index) const | CubeMesh | [virtual] |
| neighbor(unsigned int spaceIndex, int dx, int dy, int dz) const | CubeMesh | |
| numDims() const | CubeMesh | |
| resetStencil() | ChemCompt | |
| setAlwaysDiffuse(bool v) | CubeMesh | |
| setChildConcs(const Eref &e, const vector< double > &childConcs, unsigned int start) const | ChemCompt | |
| setCoords(const Eref &e, vector< double > v) | CubeMesh | |
| setDiffScale(const CubeMesh *other, vector< VoxelJunction > &ret) const | CubeMesh | |
| setDx(double v) | CubeMesh | |
| setDy(double v) | CubeMesh | |
| setDz(double v) | CubeMesh | |
| setEntireVolume(const Eref &e, double volume) | ChemCompt | |
| setIsToroid(bool v) | CubeMesh | |
| setJunctionVol(const CubeMesh *other, vector< VoxelJunction > &ret) const | CubeMesh | |
| setMeshEntryVolume(unsigned int fid, double volume) | ChemCompt | [virtual] |
| setMeshToSpace(vector< unsigned int > v) | CubeMesh | |
| setMethod(string method) | ChemCompt | |
| setNumEntries(unsigned int num) | ChemCompt | |
| setNx(unsigned int v) | CubeMesh | |
| setNy(unsigned int v) | CubeMesh | |
| setNz(unsigned int v) | CubeMesh | |
| setOneVoxelVolume(const Eref &e, unsigned int voxel, double volume) | ChemCompt | |
| setPreserveNumEntries(bool v) | CubeMesh | |
| setSpaceToMesh(vector< unsigned int > v) | CubeMesh | |
| setStencilSize(unsigned int numRows, unsigned int numCols) | MeshCompt | |
| setSurface(vector< unsigned int > v) | CubeMesh | |
| setVolumeNotRates(double volume) | ChemCompt | |
| setX0(double v) | CubeMesh | |
| setX1(double v) | CubeMesh | |
| setY0(double v) | CubeMesh | |
| setY1(double v) | CubeMesh | |
| setZ0(double v) | CubeMesh | |
| setZ1(double v) | CubeMesh | |
| spaceToIndex(double x, double y, double z) const | CubeMesh | |
| SURFACE | CubeMesh | [static] |
| surface() const | CubeMesh | |
| transmitChange(const Eref &e, double oldvol) | CubeMesh | |
| updateCoords() | CubeMesh | |
| updateM2s() | CubeMesh | |
| updateS2m() | CubeMesh | |
| vGetEntireVolume() const | CubeMesh | [virtual] |
| vGetVoxelMidpoint() const | CubeMesh | [virtual] |
| vGetVoxelVolume() const | CubeMesh | [virtual] |
| voxelVolOut() | ChemCompt | [static] |
| vSetVolumeNotRates(double volume) | CubeMesh | [virtual] |
| ~ChemCompt() | ChemCompt | [virtual] |
| ~CubeMesh() | CubeMesh | |
| ~MeshCompt() | MeshCompt | |
