ChanCommon Class Reference

#include <ChanCommon.h>

Inheritance diagram for ChanCommon:

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Collaboration diagram for ChanCommon:

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List of all members.

Public Member Functions
	ChanCommon ()
	~ChanCommon ()
void	vSetGbar (const Eref &e, double Gbar)
double	vGetGbar (const Eref &e) const
void	vSetModulation (const Eref &e, double modulation)
double	vGetModulation (const Eref &e) const
double	getModulation () const
void	vSetEk (const Eref &e, double Ek)
double	vGetEk (const Eref &e) const
void	vSetGk (const Eref &e, double Gk)
double	vGetGk (const Eref &e) const
void	vSetIk (const Eref &e, double Ic)
double	vGetIk (const Eref &e) const
void	vHandleVm (double Vm)
void	sendProcessMsgs (const Eref &e, const ProcPtr info)
void	sendReinitMsgs (const Eref &e, const ProcPtr info)
void	updateIk ()
double	getVm () const
	Utility function to access Vm.
double	getGbar () const
	Utility function to acces Gbar.
Static Public Member Functions
static const Cinfo *	initCinfo ()
	Specify the Class Info static variable for initialization.
Protected Attributes
double	Vm_
	Vm_ is input variable from compartment, used for most rates.

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Detailed Description

The ChanCommon.g handles the data fields for all ion channel classes in MOOSE, when they are using regular ee calculations rather than being zombified by the solver.

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Constructor & Destructor Documentation

ChanCommon::ChanCommon

(

)

ChanCommon::~ChanCommon

(

)

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Member Function Documentation

double ChanCommon::getGbar

(

)

const

Utility function to acces Gbar.

Referenced by SynChan::normalizeGbar(), HHChannel2D::vProcess(), and HHChannel2D::vReinit().

double ChanCommon::getModulation

(

)

const

Referenced by SynChan::calcGk().

double ChanCommon::getVm

(

)

const

Utility function to access Vm.

Reimplemented in MarkovChannel.

References Vm_.

static const Cinfo* ChanCommon::initCinfo

(

)

[static]

Specify the Class Info static variable for initialization.

Reimplemented from ChanBase.

Reimplemented in HHChannel, HHChannel2D, Leakage, MarkovChannel, MgBlock, NMDAChan, and SynChan.

void ChanCommon::sendProcessMsgs	(	const Eref &	e,
		const ProcPtr	info
	)

This function sends out the messages expected of a channel, after process. Used as a utility by various derived classes.

References ChanBase::channelOut(), ChanBase::IkOut(), and ChanBase::permeability().

Referenced by SynChan::vProcess(), NMDAChan::vProcess(), MgBlock::vProcess(), MarkovChannel::vProcess(), Leakage::vProcess(), HHChannel2D::vProcess(), and HHChannel::vProcess().

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void ChanCommon::sendReinitMsgs	(	const Eref &	e,
		const ProcPtr	info
	)

References ChanBase::channelOut(), and ChanBase::permeability().

Referenced by SynChan::vReinit(), NMDAChan::vReinit(), MgBlock::vReinit(), MarkovChannel::vReinit(), Leakage::vReinit(), HHChannel2D::vReinit(), and HHChannel::vReinit().

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void ChanCommon::updateIk

(

)

Utility function for a common computation using local variables

References Vm_.

Referenced by SynChan::vProcess(), NMDAChan::vProcess(), MgBlock::vProcess(), MarkovChannel::vProcess(), HHChannel2D::vProcess(), HHChannel::vProcess(), HHChannel2D::vReinit(), and HHChannel::vReinit().

double ChanCommon::vGetEk

(

const Eref &

e

)

const [virtual]

Implements ChanBase.

double ChanCommon::vGetGbar

(

const Eref &

e

)

const [virtual]

Implements ChanBase.

Referenced by HHChannel::vProcess(), and HHChannel::vReinit().

double ChanCommon::vGetGk

(

const Eref &

e

)

const [virtual]

Implements ChanBase.

double ChanCommon::vGetIk

(

const Eref &

e

)

const [virtual]

Implements ChanBase.

double ChanCommon::vGetModulation

(

const Eref &

e

)

const [virtual]

Implements ChanBase.

Reimplemented in HHChannel.

Referenced by HHChannel2D::vProcess(), and HHChannel2D::vReinit().

void ChanCommon::vHandleVm

(

double

Vm

)

[virtual]

Assign the local Vm_ to the incoming Vm from the compartment

Implements ChanBase.

References Vm_.

void ChanCommon::vSetEk	(	const Eref &	e,
		double	Ek
	)			[virtual]

Implements ChanBase.

void ChanCommon::vSetGbar	(	const Eref &	e,
		double	Gbar
	)			[virtual]

Implements ChanBase.

Reimplemented in SynChan.

void ChanCommon::vSetGk	(	const Eref &	e,
		double	Gk
	)			[virtual]

Implements ChanBase.

Referenced by HHChannel::vProcess(), and HHChannel::vReinit().

void ChanCommon::vSetIk	(	const Eref &	e,
		double	Ic
	)			[virtual]

Ik is read-only for MOOSE, but we provide the set func for derived classes to update it.

Implements ChanBase.

void ChanCommon::vSetModulation	(	const Eref &	e,
		double	modulation
	)			[virtual]

Implements ChanBase.

Reimplemented in HHChannel.

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Member Data Documentation

double ChanCommon::Vm_ [protected]

Vm_ is input variable from compartment, used for most rates.

Referenced by MarkovChannel::getVm(), getVm(), MarkovChannel::setVm(), updateIk(), vHandleVm(), NMDAChan::vProcess(), MgBlock::vProcess(), HHChannel::vProcess(), and HHChannel::vReinit().

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The documentation for this class was generated from the following files:

• biophysics/ChanCommon.h
• biophysics/ChanCommon.cpp