, including all inherited members.
| addProxyTransferIndex(unsigned int comptIndex, unsigned int transferIndex) | VoxelPoolsBase | |
| addProxyVoxy(unsigned int comptIndex, Id comptId, unsigned int voxel) | VoxelPoolsBase | |
| advance(const ProcInfo *p) | VoxelPools | |
| backwardReacVolumeFactor(unsigned int i, double volume) | VoxelPoolsBase | |
| filterCrossRateTerms(const vector< Id > &offSolverReacs, const vector< pair< Id, Id > > &offSolverReacCompts) | VoxelPoolsBase | |
| forwardReacVolumeFactor(unsigned int i, double volume) | VoxelPoolsBase | |
| getDiffConst(unsigned int) const | VoxelPoolsBase | |
| getN(unsigned int) const | VoxelPoolsBase | |
| getNinit(unsigned int) const | VoxelPoolsBase | |
| getVolume() const | VoxelPoolsBase | |
| getXreacScaleProducts(unsigned int i) const | VoxelPoolsBase | |
| getXreacScaleSubstrates(unsigned int i) const | VoxelPoolsBase | |
| gslFunc(double t, const double *y, double *dydt, void *params) | VoxelPools | [static] |
| hasXfer(unsigned int comptIndex) const | VoxelPoolsBase | |
| isVoxelJunctionPresent(Id i1, Id i2) const | VoxelPoolsBase | |
| print() const | VoxelPools | |
| rates_ | VoxelPoolsBase | [protected] |
| reinit(double dt) | VoxelPools | |
| VoxelPoolsBase::reinit() | VoxelPoolsBase | |
| resetXreacScale(unsigned int size) | VoxelPoolsBase | |
| resizeArrays(unsigned int totNumPools) | VoxelPoolsBase | |
| S() const | VoxelPoolsBase | |
| scaleVolsBufsRates(double ratio, const Stoich *stoichPtr) | VoxelPoolsBase | |
| setDiffConst(unsigned int, double v) | VoxelPoolsBase | |
| setInitDt(double dt) | VoxelPools | |
| setN(unsigned int i, double v) | VoxelPoolsBase | |
| setNinit(unsigned int, double v) | VoxelPoolsBase | |
| setStoich(Stoich *stoich, const OdeSystem *ode) | VoxelPools | |
| setVolume(double vol) | VoxelPoolsBase | |
| setVolumeAndDependencies(double vol) | VoxelPools | [virtual] |
| Sinit() const | VoxelPoolsBase | |
| size() const | VoxelPoolsBase | |
| stoichPtr_ | VoxelPoolsBase | [protected] |
| Svec() | VoxelPoolsBase | |
| updateAllRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates) | VoxelPools | [virtual] |
| updateRates(const double *s, double *yprime) const | VoxelPools | |
| updateRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates, unsigned int index) | VoxelPools | [virtual] |
| updateReacVelocities(const double *s, vector< double > &v) const | VoxelPools | |
| varS() | VoxelPoolsBase | |
| varSinit() | VoxelPoolsBase | |
| VoxelPools() | VoxelPools | |
| VoxelPoolsBase() | VoxelPoolsBase | |
| xferIn(const vector< unsigned int > &poolIndex, const vector< double > &values, const vector< double > &lastValues, unsigned int voxelIndex) | VoxelPoolsBase | |
| xferInOnlyProxies(const vector< unsigned int > &poolIndex, const vector< double > &values, unsigned int numProxyPools, unsigned int voxelIndex) | VoxelPoolsBase | |
| xferOut(unsigned int voxelIndex, vector< double > &values, const vector< unsigned int > &poolIndex) | VoxelPoolsBase | |
| ~VoxelPools() | VoxelPools | [virtual] |
| ~VoxelPoolsBase() | VoxelPoolsBase | [virtual] |
