, including all inherited members.
| addRow(unsigned int index, const vector< double > &entry, const vector< unsigned int > &colIndex) | MeshCompt | |
| buildDefaultMesh(const Eref &e, double volume, unsigned int numEntries) | ChemCompt | |
| buildJunction(ChemCompt *other, vector< VoxelJunction > &ret) | ChemCompt | |
| ChemCompt() | ChemCompt | |
| clearExtendedMeshEntryVolume() | MeshCompt | [virtual] |
| distance(double x, double y, double z) | ChemCompt | [static] |
| extendedMeshEntryVolume(unsigned int fid) const | MeshCompt | [virtual] |
| extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj) | MeshCompt | |
| ChemCompt::extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj)=0 | ChemCompt | [pure virtual] |
| flipRet(vector< VoxelJunction > &ret) const | ChemCompt | |
| getChildConcs(const Eref &e, vector< double > &childConcs) const | ChemCompt | |
| getCoordinates(unsigned int fid) const =0 | ChemCompt | [pure virtual] |
| getDiffusionArea(unsigned int fid) const =0 | ChemCompt | [pure virtual] |
| getDiffusionScaling(unsigned int fid) const =0 | ChemCompt | [pure virtual] |
| getDimensions() const | ChemCompt | |
| getEntireVolume(const Eref &e) const | ChemCompt | |
| getMeshDimensions(unsigned int fid) const =0 | ChemCompt | [pure virtual] |
| getMeshEntryVolume(unsigned int fid) const =0 | ChemCompt | [pure virtual] |
| getMeshType(unsigned int fid) const =0 | ChemCompt | [pure virtual] |
| getMethod() const | ChemCompt | |
| getNeighbors(unsigned int fid) const | MeshCompt | [virtual] |
| getNumEntries() const | ChemCompt | |
| getOneVoxelVolume(const Eref &e, unsigned int voxel) const | ChemCompt | |
| getParentVoxel() const =0 | MeshCompt | [pure virtual] |
| getStencil() const | MeshCompt | |
| getStencilIndex(unsigned int row) const | ChemCompt | |
| getStencilRate(unsigned int row) const | ChemCompt | |
| getStencilRow(unsigned int meshIndex, const double **entry, const unsigned int **colIndex) const | MeshCompt | [virtual] |
| getVoxelArea() const =0 | MeshCompt | [pure virtual] |
| getVoxelLength() const =0 | MeshCompt | [pure virtual] |
| getVoxelMidpoint() const | ChemCompt | |
| getVoxelVolume() const | ChemCompt | |
| handleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads) | ChemCompt | |
| indexToSpace(unsigned int index, double &x, double &y, double &z) const =0 | ChemCompt | [pure virtual] |
| initCinfo() | ChemCompt | [static] |
| innerBuildDefaultMesh(const Eref &e, double volume, unsigned int numEntries)=0 | ChemCompt | [pure virtual] |
| innerGetDimensions() const =0 | ChemCompt | [pure virtual] |
| innerGetNumEntries() const =0 | ChemCompt | [pure virtual] |
| innerGetStencilRate(unsigned int row) const | MeshCompt | [virtual] |
| innerHandleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads)=0 | ChemCompt | [pure virtual] |
| innerResetStencil() | MeshCompt | [virtual] |
| innerSetNumEntries(unsigned int n)=0 | ChemCompt | [pure virtual] |
| lookupEntry(unsigned int index) | ChemCompt | |
| matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const =0 | ChemCompt | [pure virtual] |
| MeshCompt() | MeshCompt | |
| nearest(double x, double y, double z, unsigned int &index) const =0 | ChemCompt | [pure virtual] |
| resetStencil() | ChemCompt | |
| setChildConcs(const Eref &e, const vector< double > &childConcs, unsigned int start) const | ChemCompt | |
| setEntireVolume(const Eref &e, double volume) | ChemCompt | |
| setMeshEntryVolume(unsigned int fid, double volume) | ChemCompt | [virtual] |
| setMethod(string method) | ChemCompt | |
| setNumEntries(unsigned int num) | ChemCompt | |
| setOneVoxelVolume(const Eref &e, unsigned int voxel, double volume) | ChemCompt | |
| setStencilSize(unsigned int numRows, unsigned int numCols) | MeshCompt | |
| setVolumeNotRates(double volume) | ChemCompt | |
| vGetEntireVolume() const =0 | ChemCompt | [pure virtual] |
| vGetVoxelMidpoint() const =0 | ChemCompt | [pure virtual] |
| vGetVoxelVolume() const =0 | ChemCompt | [pure virtual] |
| voxelVolOut() | ChemCompt | [static] |
| vSetVolumeNotRates(double volume)=0 | ChemCompt | [pure virtual] |
| ~ChemCompt() | ChemCompt | [virtual] |
| ~MeshCompt() | MeshCompt | |
