, including all inherited members.
assignProxyPools(const map< Id, vector< Id > > &xr, Id myKsolve, Id otherKsolve, Id otherComptId) | Ksolve | |
assignXferIndex(unsigned int numProxyMols, unsigned int xferCompt, const vector< vector< unsigned int > > &voxy) | Ksolve | |
assignXferVoxels(unsigned int xferCompt) | Ksolve | |
buildCrossReacVolScaling(Id otherKsolve, const vector< VoxelJunction > &vj) | Ksolve | |
compartment_ | ZombiePoolInterface | [protected] |
filterCrossRateTerms(const vector< Id > &xreacs, const vector< pair< Id, Id > > &xrt) | ZombiePoolInterface | |
getBlock(vector< double > &values) const | Ksolve | [virtual] |
getCompartment() const | ZombiePoolInterface | |
getDiffConst(const Eref &e) const | Ksolve | [virtual] |
getDsolve() const | Ksolve | |
getEpsAbs() const | Ksolve | |
getEpsRel() const | Ksolve | |
getEstimatedDt() const | Ksolve | |
getMethod() const | Ksolve | |
getN(const Eref &e) const | Ksolve | [virtual] |
getNinit(const Eref &e) const | Ksolve | [virtual] |
getNumAllVoxels() const | Ksolve | |
getNumLocalVoxels() const | Ksolve | [virtual] |
getNumPools() const | Ksolve | [virtual] |
getNvec(unsigned int voxel) const | Ksolve | |
getPoolIndex(const Eref &e) const | Ksolve | [virtual] |
getStoich() const | Ksolve | |
getVoxelIndex(const Eref &e) const | Ksolve | |
initCinfo() | Ksolve | [static] |
initProc(const Eref &e, ProcPtr p) | Ksolve | |
initReinit(const Eref &e, ProcPtr p) | Ksolve | |
isBuilt_ | ZombiePoolInterface | [protected] |
Ksolve() | Ksolve | |
matchJunctionVols(vector< double > &vols, Id otherCompt) const | Ksolve | |
pools(unsigned int i) | Ksolve | [virtual] |
print() const | Ksolve | |
process(const Eref &e, ProcPtr p) | Ksolve | |
reinit(const Eref &e, ProcPtr p) | Ksolve | |
setBlock(const vector< double > &values) | Ksolve | [virtual] |
setCompartment(Id compartment) | ZombiePoolInterface | [virtual] |
setDiffConst(const Eref &e, double v) | Ksolve | [virtual] |
setDsolve(Id dsolve) | Ksolve | [virtual] |
setEpsAbs(double val) | Ksolve | |
setEpsRel(double val) | Ksolve | |
setMethod(string method) | Ksolve | |
setMotorConst(const Eref &e, double val) | ZombiePoolInterface | [inline, virtual] |
setN(const Eref &e, double v) | Ksolve | [virtual] |
setNinit(const Eref &e, double v) | Ksolve | [virtual] |
setNumAllVoxels(unsigned int num) | Ksolve | [virtual] |
setNumPools(unsigned int num) | Ksolve | [virtual] |
setNvec(unsigned int voxel, vector< double > vec) | Ksolve | |
setStoich(Id stoich) | Ksolve | [virtual] |
setupCrossSolverReacs(const map< Id, vector< Id > > &xr, Id otherStoich) | ZombiePoolInterface | |
setupCrossSolverReacVols(const vector< vector< Id > > &subCompts, const vector< vector< Id > > &prdCompts) | ZombiePoolInterface | |
setupXfer(Id myKsolve, Id otherKsolve, unsigned int numProxyMols, const vector< VoxelJunction > &vj) | Ksolve | |
stoich_ | ZombiePoolInterface | [protected] |
updateRateTerms(unsigned int index) | Ksolve | [virtual] |
updateVoxelVol(vector< double > vols) | Ksolve | |
volume(unsigned int i) const | Ksolve | [virtual] |
xComptIn(const Eref &e, Id srcZombiePoolInterface, vector< double > values) | ZombiePoolInterface | |
xComptOut() | Ksolve | [static] |
xfer_ | ZombiePoolInterface | [protected] |
ZombiePoolInterface() | ZombiePoolInterface | |
~Ksolve() | Ksolve | |